Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 4 5
2 4 5
3 4 5
4 4 5
5 17 21

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 18 27
Multiple Base Substitutions 0 0
Deletions 6 10
Insertions 6 14
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 30 51

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6 0 80.1 3984744 93.4% 3721750 134.0
A1 F11 I1 R1 5 0 53.6 2573778 93.6% 2409056 137.9
A1 F32 I1 R1 6 0 33.2 1640510 93.3% 1530595 134.0
A1 F54 I1 R1 5 0 50.4 2538060 91.4% 2319786 134.9
A1 F84 I0 R1 199 0 17.9 892934 87.5% 781317 139.1
A1 F84 I1 R1 12 0 334.4 14605544 95.3% 13919083 148.8
A2 F11 I1 R1 3 0 45.6 2114282 94.3% 1993767 140.4
A2 F31 I1 R1 5 0 69.7 3489160 93.9% 3276321 132.1
A2 F52 I1 R1 8 0 64.3 3064064 93.7% 2871027 137.9
A2 F83 I0 R1 179 0 21.1 984528 94.5% 930378 139.6
A2 F83 I1 R1 11 0 394.6 17278798 95.4% 16483973 148.3
A3 F11 I1 R1 7 0 44.9 2143478 93.6% 2006295 138.3
A3 F32 I1 R1 7 0 76.1 3745334 93.0% 3483160 135.7
A3 F53 I1 R1 7 0 91.2 4489836 94.1% 4224935 133.2
A3 F85 I0 R1 202 0 24.2 1130052 94.6% 1069029 138.9
A3 F85 I1 R1 13 0 321.5 13758948 96.6% 13291143 149.6
A4 F9 I1 R1 3 0 29.3 1453292 93.7% 1361734 132.8
A4 F32 I1 R1 6 0 42.3 2113526 93.5% 1976146 132.7
A4 F53 I1 R1 9 0 31.2 1507058 93.7% 1412113 136.4
A4 F88 I0 R1 435 0 30.9 1505916 94.3% 1420078 134.0
A4 F88 I1 R1 13 0 294.5 13100130 95.5% 12510624 145.6

Mutation Needle Plot

Mutation Targets

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