Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
5 4 5
6 4 5
7 4 5
8 4 5
4 16 20

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 139 315
Multiple Base Substitutions 1 19
Deletions 18 31
Insertions 13 33
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 171 398

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F26 I1 R1 5 0 135.8 6803244 94.2% 6408655 131.4
A5 F43 I1 R1 6 0 69.6 3402438 93.9% 3194889 134.5
A5 F63 I1 R1 5 0 63.7 3148838 93.9% 2956758 133.4
A5 F91 I0 R1 918 0 53.4 2573728 94.2% 2424451 136.5
A5 F91 I5 R1 6 0 62.9 3170796 93.7% 2971035 131.5
A6 F19 I1 R1 6 0 36.2 1751554 93.7% 1641206 136.7
A6 F35 I1 R1 5 0 55.4 2668064 94.0% 2507980 137.1
A6 F54 I1 R1 8 0 73.7 3695248 93.5% 3455056 132.0
A6 F80 I0 R1 1105 0 125.4 6144758 94.6% 5812941 133.2
A6 F80 I5 R1 8 0 61.1 2932718 95.1% 2789014 135.0
A7 F22 I1 R1 5 0 95.5 4595946 94.2% 4329381 136.3
A7 F36 I1 R1 5 0 96.9 4676278 94.6% 4423758 135.7
A7 F55 I1 R1 9 0 17.1 823558 91.9% 756849 140.1
A7 F80 I0 R1 1148 0 65.4 3296958 93.8% 3092546 131.2
A7 F80 I2 R1 7 0 58.7 2928610 94.0% 2752893 132.8
A8 F23 I1 R1 6 0 89.4 4352318 93.8% 4082474 136.0
A8 F36 I1 R1 6 0 116.4 5770842 95.0% 5482299 132.7
A8 F56 I1 R1 5 0 46.6 2293046 94.7% 2171514 133.0
A8 F83 I0 R1 969 0 96.3 4677704 94.6% 4425107 134.6
A8 F83 I5 R1 8 0 66.5 3267118 94.3% 3080892 133.9

Mutation Needle Plot

Mutation Targets

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