breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 690,144 A→G intergenic (+21/‑2438) bauC → / → PP_RS08750 Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
JC 2,191,046 +CTGAAAATATCTCTTAT intergenic (‑1/‑313) PP_RS10045 ← / → purU_3 LysR family transcriptional regulator/Formyltetrahydrofolate deformylase
JC 4,257,335 +GCGGCCGC intergenic (‑281/+7) CJ019_03991 ← / ← CJ019_03994 putative ABC transporter ATP‑binding protein/hypothetical protein
RA 5,386,500 C→A intergenic (‑509/+1142) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,503 C→G intergenic (‑512/+1139) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,506 1 bp→GT intergenic (‑515/+1136) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,507 +C intergenic (‑516/+1135) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,510 2 bp→TA intergenic (‑519/+1131) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,513 +AA intergenic (‑522/+1129) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,514 T→C intergenic (‑523/+1128) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,517 G→C intergenic (‑526/+1125) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,519 G→A intergenic (‑528/+1123) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
RA 5,386,811 C→T intergenic (‑820/+831) CJ019_05070 ← / ← nptII hypothetical protein/neomycin phosphotransferase
JC 5,391,707 +54 bp intergenic (+124/‑1253) ligH → / → CJ019_05072 10‑formyltetrahydrofolate synthetase/hypothetical protein
RA 5,760,598 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ ACB143 87969 88060 92 24 [21] [17] 24 [CJ019_00094]–[CJ019_00095] [CJ019_00094],[CJ019_00095]
* * ÷ ACB143 277588 277690 103 24 [21] [22] 23 [betT2]–[tauD_2] [betT2],[tauD_2]
* * ÷ ACB143 517190 517347 158 26 [18] [22] 23 tyrS/birA Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
* * ÷ ACB143 674242 674382 141 23 [22] [22] 23 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ ACB143 1585595 1585722 128 24 [22] [20] 23 CJ019_01493 hypothetical protein
* * ÷ ACB143 1697626 1697747 122 25 [22] [22] 23 [CJ019_01593]–[CJ019_01594] [CJ019_01593],[CJ019_01594]
* * ÷ ACB143 1833102 1833227 126 26 [20] [21] 25 [resA_1]–[CJ019_01751] [resA_1],[CJ019_01751]
* * ÷ ACB143 1940782 1940926 145 27 [22] [22] 23 [CJ019_01857] [CJ019_01857]
* * ÷ ACB143 2288818 2288934 117 23 [22] [22] 23 [CJ019_02172] [CJ019_02172]
* * ÷ ACB143 3046178 3046347 170 23 [22] [20] 23 [rcsC_5]–[degU_2] [rcsC_5],[degU_2]
* * ÷ ACB143 3769351 3769465 115 23 [22] [22] 24 [CJ019_03581] [CJ019_03581]
* * ÷ ACB143 3839262 3839384 123 24 [22] [21] 24 [argP_2] [argP_2]
* * ÷ ACB143 4163761 4163863 103 24 [21] [21] 24 katG/leuO_2 Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
* * ÷ ACB143 4521556 4521664 109 23 [22] [19] 23 [CJ019_04289] [CJ019_04289]
* * ÷ ACB143 4732375 4732490 116 23 [21] [22] 24 [CJ019_04468] [CJ019_04468]
* * ÷ ACB143 4789683 4789840 158 24 [22] [22] 23 [qseC_3] [qseC_3]
* * ÷ ACB143 4944230 4944332 103 23 [20] [18] 23 [CJ019_04642] [CJ019_04642]
* * ÷ ACB143 5155797 5155951 155 23 [19] [19] 31 CJ019_04852/CJ019_04853 hypothetical protein/Beta‑ketodecanoyl‑[acyl‑carrier‑protein]synthase
* * ÷ ACB143 5192933 5193044 112 24 [20] [22] 25 [gltR_4]–[CJ019_04888] [gltR_4],[CJ019_04888]
* * ÷ ACB143 5894882 5895030 149 24 [22] [21] 23 [czcA_3] [czcA_3]