| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 2170758 = | 126 (2.860) | 35 (0.810) | 23/238 | NT | 34.8% | intergenic (‑773/‑64) | arsR1/CJ019_02060 | Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16 |
| ? | ACB143 | 5563630 = | 7 (0.160) | coding (1047/1902 nt) | mutL_2 | DNA mismatch repair protein MutL | |||||
GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170893‑2170758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTTCA > ACB143/5563630‑5563763 GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG > 6:8273/1‑136GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG > 5:167852/1‑136GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTG > 1:2762/1‑135GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTG > 3:291288/1‑135 ACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGG > 5:41036/1‑136 CCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCA > 6:155726/1‑136 CGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAG < 5:282085/136‑1 GCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCT < 8:272065/136‑1 GCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTA > 3:221394/1‑136 CGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTA < 3:119988/135‑1 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATC > 1:76450/1‑136 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATC > 3:75846/1‑136 TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCAAACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTGCGGACGTACATC > 3:150937/1‑136 CGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCG > 7:221106/1‑136 GAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCT‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGC > 5:285784/1‑136 ACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG < 5:8273/134‑1 ACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG < 7:55273/134‑1 GATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAGCCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT < 7:11475/135‑1 GATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT < 4:221394/135‑1 AATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG > 1:127175/1‑124 AATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG < 2:127175/124‑1 CTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGC > 3:161119/1‑135 ATGATTGTCCCCACGGTCACGACGTCCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC < 3:215686/136‑1 ATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC < 5:155726/136‑1 ATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC < 1:27950/136‑1 ATGATTGTCCCAACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACTCAGTCTGGTACGGCAGCAGGTGCGGCCAGGTGGTCTTCCGGACGTTCATCGGCCAAGGCACGGTGCAAGGTGCCATAC < 3:220599/136‑1 CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT > 8:221744/1‑136 CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT > 8:39758/1‑136 CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT > 3:96408/1‑136 CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT > 2:300056/1‑136 CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT > 1:159213/1‑136 CAGAAGGTTAGACATCCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTC < 5:117492/136‑1 AGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGG > 7:55297/1‑101 AGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGG < 8:55297/101‑1 AAGGATAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCG < 4:28236/136‑1 ACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTA > 5:36510/1‑136 CAACCGCGGGCGTTTTCACACAGTCTGGTAAGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAATGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTAC < 4:235384/136‑1 GGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGC > 5:284795/1‑136 GGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCT > 1:116192/1‑136 GGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTTCA > 4:100990/1‑136 GGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAG < 7:224748/63‑1 GGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAG > 8:224748/1‑63 GACGTAGTCGTCCAGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170893‑2170758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTTCA > ACB143/5563630‑5563763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |