New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 2172434	148 (3.360)	37 (0.850)	24/240	NT	32.5%	intergenic (+176/+92)	CJ019_02060/CJ019_02061	IS1182 family transposase ISPpu16/hypothetical protein
	?	ACB143	= 5563631	7 (0.160)					coding (1046/1902 nt)	mutL_2	DNA mismatch repair protein MutL

AGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172302‑2172434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGG  <  ACB143/5563631‑5563508                                                                                                                                                                                                                                                                   AGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTAC                                                                                                                           >  1:228962/1‑136          CACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGG                                                                                                                  >  8:262224/1‑136          CACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGG                                                                                                                  >  6:267017/1‑136                        CGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGC                                                                                                    >  7:35512/1‑136                        CGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGG                                                                                                     <  4:275533/135‑1                             CAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAG                                                                                                 >  7:177320/1‑134                                 ACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCC                                                                                           <  4:286220/136‑1                                 ACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCC                                                                                           <  1:65278/136‑1                                        TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGT                                                                                    >  4:160938/1‑136                                            AGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGG                                                                                <  5:40879/136‑1                                              CTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGC                                                                              <  4:216070/136‑1                                                         AATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGA                                                                    >  5:233685/1‑135                                                         AATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCATTCAACGAATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCTCCCCACCGGCCAGCAGGCAGGTGAGTTCGGGCCCCAGGGTGA                                                                    >  2:77018/1‑135                                                              CTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCG                                                              >  4:47265/1‑136                                                                    AGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGC                                                        >  1:293733/1‑136                                                                    AGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGC                                                        >  8:26411/1‑136                                                                        TGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTC                                                     <  5:256224/135‑1                                                                                     TAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTAGCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGA                                         <  2:206853/134‑1                                                                                      AGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCC                                                                           <  7:54759/99‑1                                                                                      AGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCC                                                                           >  8:54759/1‑99                                                                                             TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTC                                 >  1:171265/1‑134                                                                                             TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGC                                                                              <  8:20450/89‑1                                                                                             TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGC                                                                              >  7:20450/1‑89                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                            >  5:233373/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                            >  6:118978/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                            >  2:85555/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                            >  6:286882/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGACCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                            >  2:236097/1‑136                                                                                                GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGCACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC                            >  7:83731/1‑136                                                                                                  CCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCC                          >  1:241653/1‑136                                                                                                   CTTCAACGCATTTCGCGTGTTTTCACACAGCCTTGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCG                         <  4:208722/136‑1                                                                                                   CTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCG                         <  3:99375/136‑1                                                                                                               TCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTT             >  3:41013/1‑136                                                                                                                 GCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTC           >  1:28276/1‑136                                                                                                                 GCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTC           >  5:79120/1‑136                                                                                                                 GCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTT            <  1:85555/135‑1                                                                                                                  CGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCC          <  8:110963/136‑1                                                                                                                           ACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTACAATGGTGG  >  1:129882/1‑135                                                                                                                                                                                                                                                                   AGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172302‑2172434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGG  <  ACB143/5563631‑5563508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.