New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 3376605	46 (1.040)	41 (0.930)	27/242	NT	62.6%	coding (501/546 nt)	CJ019_03184	hypothetical protein
	?	ACB143	= 4735171	3 (0.070)					coding (270/1443 nt)	hisC_7	Histidinol‑phosphate aminotransferase

CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/3376474‑3376605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATCGCCAAGGTGAC  <  ACB143/4735171‑4735037                                                                                                                                                                                                                                                                             CTTCCTCAATGGATGGCTGAAGCGACTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTC                                                                                                                                     <  6:93833/136‑1    CCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCAC                                                                                                                                   <  6:26457/135‑1       CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGC                                                                                                                               >  1:200658/1‑136       CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGC                                                                                                                               >  7:121628/1‑136             ATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAG                                                                                                                          >  3:286793/1‑135                     AGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAAGGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATAATC                                                                                                                   >  1:101871/1‑134                     AGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCA                                                                                                                 >  8:80814/1‑136                            GGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCCCCACCCTCATCCAGaacgtt                                                                                                          >  8:102442/1‑130                                     cagGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAG                                                                                                 <  3:63935/133‑1                                     GCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAG                                                                                                 <  7:40292/136‑1                                     GCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAG                                                                                                 <  4:214762/136‑1                                       AGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGC                                                                                               <  8:267562/136‑1                                              GCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCG                                                                                         <  3:645/135‑1                                                 GAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGGGCGCCCGCATCATCCCGCAGGTGGTGCATGCGGCGCGGCGCGgg                                                                                     >  6:40957/1‑134                                                  AGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATG                                                                                    <  1:207468/136‑1                                                  AGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGAT                                                                                     <  4:182954/135‑1                                                  AGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGAT                                                                                     <  6:188214/135‑1                                                  AGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGAT                                                                                     <  3:296780/135‑1                                                      GGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCCCCATCATCCAGCACGTGCTGACAGAGGCGCGCCCCGCTGGcgg                                                                                >  4:63935/1‑133                                                      GGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGAT                                                                                     >  8:41072/1‑131                                                      GGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGAT                                                                                     <  7:41072/131‑1                                                          TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGGGTGTTC                                                                            >  3:174937/1‑136                                                            CTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAAATTTTGCCTTATCTCGTCATGACCCCGGTGACGCGCGCCAGCATCATACAGCAGGTTCTGACTGAGGCGAGCCGCGATGGTGTGTTCCC                                                                          <  2:4880/136‑1                                                               ATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTT                                                                       <  8:242755/136‑1                                                                    CTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTG                                                                     <  3:37497/133‑1                                                                      CGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTTACTGACGCGCGCCGCCAAGGTGTGTTCCCGTTTTGTGCT                                                                >  3:24530/1‑136                                                                      CGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCCCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCT                                                                >  4:114783/1‑136                                                                       GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTG                                                               >  5:285404/1‑136                                                                           aacTACACTAGCTTAGAGACCGAATTGCCTAATATTTGCCTTAGCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGGTCCCGTTTGGTGCTGCTG                                                            <  8:276933/132‑1                                                                            AATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTG                                                          <  4:4392/136‑1                                                                                      CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCG                                                <  6:249158/136‑1                                                                                      CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCG                                                <  8:121628/136‑1                                                                                           AGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTAC                                           >  8:240960/1‑136                                                                                           AGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAG                                                                                                 >  5:237525/1‑82                                                                                           AGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAG                                                                                                 <  6:237525/82‑1                                                                                            GAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGAAAGAGGCCCGCCGCCATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTAac                                          >  5:280188/1‑134                                                                                                GAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGCCTACCTGC                                       >  7:114342/1‑135                                                                                                   TGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGT                                   >  7:163830/1‑136                                                                                                   TGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGT                                   >  2:41572/1‑136                                                                                                                  CTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCA                    <  6:3505/136‑1                                                                                                                  CTTATCTCGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCA                    <  3:131396/136‑1                                                                                                                         CGGCATGACCCCGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATC             <  8:19795/136‑1                                                                                                                                   CCGGTCACGCGCGCCAGCATCAACCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCCTCAGCAAATAGCCAAGGTGg   >  5:236254/1‑135                                                                                                                                    CGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATCGCCAAGGTGAC  <  7:151463/136‑1                                                                                                                                    CGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATCGCCAAGGTGAC  <  4:286793/136‑1                                                                                                                                    CGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATCGCCAAGGTGAC  <  6:280188/136‑1                                                                                                                                    CGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATCGCCAAGGTGAC  <  2:87741/136‑1                                                                                                                                    CGGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATCGCCAAGGTGAC  <  3:93906/136‑1                                                                                                                                                                                                                                                                             CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/3376474‑3376605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTCACGCGCGCCAGCATCATCCAGCAGGTGCTGACTGAGGCGCGCCGCGATGGTGTGTTCCCGTTTGGTGCTGCTGTGCCGCATGTCGACTACCTGCCAGTGCGCGCCCTGCATCAGCAAATCGCCAAGGTGAC  <  ACB143/4735171‑4735037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.