New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	2155685 =	47 (0.710)	61 (0.920)	32/260	0.7	53.3%	coding (301/369 nt)	tmk_1	Thymidylate kinase
	?	ACB143	= 2220562	60 (0.910)					coding (36/369 nt)	tmk_2	Thymidylate kinase

GAAACAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2155815‑2155685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAAAATGC  <  ACB143/2220562‑2220438                                                                                                                                                                                                                                                                  GAAACAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGC                                                                                                                            <  8:199308/134‑1                 ATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTT                                                                                                           <  3:93508/135‑1                  TGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                         <  5:263352/136‑1                  TGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTG                                                                                                          <  7:266178/135‑1                   tcaaccCTGCCATGATCTAAGCTGAATCCCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                         <  2:385033/129‑1                   GCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                         <  1:72634/135‑1                   GCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                         <  2:313325/135‑1                   GCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                         <  8:345072/135‑1                     TACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTGTTGTATTCGTTCTTGAG                                                                                                        >  7:367165/1‑134                     TACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAG                                                                                                        >  8:362354/1‑134                     TACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTG                                                                                                                      <  6:255542/120‑1                     TACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTG                                                                                                                      >  5:255542/1‑120                        GCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAA                                                                                                    <  3:243566/135‑1                          TGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATG                                                                                                  >  7:82261/1‑135                          TGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATG                                                                                                  >  7:327156/1‑135                          TGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATG                                                                                                  >  6:186557/1‑135                          TGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAAT                                                                                                   >  1:297093/1‑134                          TGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTCAGCAGTAAAAGAATATAGGGCGTATTGTATTCGTTCTTGAGTAAATGT                                                                                                 >  6:41613/1‑136                            CCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTGTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAA                                                                                               <  6:157039/136‑1                             CATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACGATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAA                                                                                               <  1:68451/135‑1                               TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGCCCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTAGTTCTTGATTAAATGTAAAC                                                                                             >  7:330299/1‑135                               TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAAGCTAGCTCACCATCAAATTTCTCTTCATGTTTACGTTGAGCATTATAAGATAATAGGGCGTCTTGTATTAGTTCTTGAGTAAATGTAAACA                                                                                            >  6:285976/1‑136                               TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGCGCATTAAAAGAATATAGGGCGTCTTGTAGTCGTTCTTGAGTAAATGTAAAC                                                                                             >  7:335503/1‑135                               TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGTGCGTATTGTATTAGTTCTTGAGTAAATGTAAA                                                                                              >  7:289259/1‑134                               TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                            <  6:78585/136‑1                               TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                            <  6:279427/136‑1                               TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTGGTATTCGTTGTTGATTAAATGTAAAC                                                                                             >  8:366642/1‑135                                GATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                            <  7:175393/135‑1                                      CGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATA                                                                                          <  6:360976/131‑1                                       GCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATTTAAACATAGGCCTA                                                                                    >  6:558/1‑136                                       GCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATA                                                                                          <  2:297093/130‑1                                       GCTGAATAGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATA                                                                                          <  4:141014/130‑1                                         TGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTAT                                                                                   <  2:297050/135‑1                                         TGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                         >  5:87146/1‑113                                         TGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                         <  6:87146/113‑1                                         TGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTGCTTGAGTAAATGTAAACATAGGCCTAT                                                                                   >  4:316561/1‑135                                             TCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATA                                                                               <  3:151769/135‑1                                               GCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACG                                                                             >  4:239913/1‑135                                                   GATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTgc                                                                         >  2:22956/1‑133                                                        TACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTAC                                                                     <  7:292165/134‑1                                                                  GGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAA                                                         <  5:102498/136‑1                                                                  GGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTA                                                           <  3:2108/134‑1                                                                   GCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAA                                                         <  7:326003/135‑1                                                                   GCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAA                                                         <  7:38432/135‑1                                                                   GCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAA                                                         <  4:255493/135‑1                                                                      ACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACAT                                                      <  7:333295/135‑1                                                                          AACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGT                                                  >  4:122215/1‑135                                                                          AACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAG                                                   >  2:217267/1‑134                                                                            CCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCT                                               <  5:45128/136‑1                                                                             CTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCGTTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCT                                               <  4:250558/135‑1                                                                             CTAGCTCACCATCAAATTTCTCATCATGTTTACCTTGATCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCT                                               <  8:190876/135‑1                                                                                   CACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCC                                         >  3:395890/1‑135                                                                                     CCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCT                                       <  8:43259/135‑1                                                                                         CAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAA                                   >  1:65104/1‑135                                                                                                              CTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTACCTTACTAAGAATGTAAACATGAGTTCTACATCACTCTAACCACCGAAATTCGGGGCCTGGA             >  5:36466/1‑136                                                                                                                TGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAG            >  3:229094/1‑135                                                                                                                    CATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCA         >  8:15617/1‑134                                                                                                                     ATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAA       >  6:348190/1‑135                                                                                                                     ATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAA        >  4:57415/1‑134                                                                                                                     ATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAA        >  3:398244/1‑134                                                                                                                          AAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAAAATGC  >  6:147396/1‑135                                                                                                                                                                                                                                                                  GAAACAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2155815‑2155685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAAAATGC  <  ACB143/2220562‑2220438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.