mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 39 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 5,693,175 | 0 | A | C | 54.8% | ‑2.1 / 13.2 | 44 | S236R (AGC→CGC) | pyrC' | Dihydroorotase‑like protein |
| * | ACB143 | 1,542,102 | 0 | T | G | 53.8% | 1.2 / 11.8 | 13 | intergenic (+31/‑214) | CJ019_01454/groS | hypothetical protein/10 kDa chaperonin |
| * | ACB143 | 5,995,710 | 0 | T | G | 51.7% | 13.0 / 27.8 | 29 | *210Y (TAA→TAC) | ycaC_4 | putative hydrolase YcaC |
| * | ACB143 | 3,608,498 | 0 | T | A | 47.8% | ‑6.3 / 10.7 | 23 | intergenic (+21/‑208) | tenA/codB | Aminopyrimidine aminohydrolase/Cytosine permease |
| * | ACB143 | 5,161,325 | 0 | G | T | 46.7% | 24.8 / 15.5 | 45 | intergenic (‑127/‑377) | CJ019_04854/puuA_3 | hypothetical protein/Gamma‑glutamylputrescine synthetase PuuA |
| * | ACB143 | 5,768,332 | 0 | T | G | 45.1% | 48.3 / 13.1 | 53 | S609R (AGC→CGC) | caiT | L‑carnitine/gamma‑butyrobetaine antiporter |
| * | ACB143 | 5,995,709 | 0 | C | G | 44.8% | 21.3 / 10.4 | 29 | intergenic (‑117/+1) | CJ019_05611/ycaC_4 | hypothetical protein/putative hydrolase YcaC |
| * | ACB143 | 5,383,759 | 0 | T | G | 43.8% | 30.1 / 10.8 | 32 | intergenic (+529/‑329) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB143 | 5,300,676 | 0 | A | C | 41.9% | 14.1 / 10.1 | 31 | intergenic (‑106/+3467) | recC/PP_RS08750 | RecBCD enzyme subunit RecC/tRNA‑Val |
| * | ACB143 | 5,383,769 | 0 | C | G | 41.2% | 44.7 / 16.0 | 34 | intergenic (+539/‑319) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB143 | 3,902,179 | 0 | T | G | 40.3% | 68.2 / 17.7 | 67 | V167G (GTG→GGG) | CJ019_03691 | hypothetical protein |
| * | ACB143 | 5,768,328 | 0 | T | G | 39.6% | 57.4 / 10.2 | 53 | E610A (GAG→GCG) | caiT | L‑carnitine/gamma‑butyrobetaine antiporter |
| * | ACB143 | 5,383,758 | 0 | C | G | 39.4% | 42.7 / 17.6 | 33 | intergenic (+528/‑330) | CJ019_05064/CJ019_05067 | putative protein/hypothetical protein |
| * | ACB143 | 5,300,655 | 0 | A | G | 38.5% | 13.0 / 11.3 | 30 | intergenic (‑85/+3488) | recC/PP_RS08750 | RecBCD enzyme subunit RecC/tRNA‑Val |
| * | ACB143 | 434,376 | 0 | G | . | 34.6% | 55.7 / 31.3 | 26 | coding (207/1173 nt) | bioF | 8‑amino‑7‑oxononanoate synthase |
| * | ACB143 | 3,273,878 | 0 | C | A | 34.4% | 80.3 / 29.8 | 61 | D40E (GAC→GAA) | fabG_5 | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG |
| * | ACB143 | 6,043,196 | 0 | C | A | 34.2% | 80.0 / 35.6 | 73 | A37S (GCC→TCC) | puuD_3 | Gamma‑glutamyl‑gamma‑aminobutyrate hydrolasePuuD |
| * | ACB143 | 1,639,779 | 0 | T | G | 33.8% | 89.0 / 15.4 | 71 | N212H (AAC→CAC) | gcd | Quinoprotein glucose dehydrogenase |
| * | ACB143 | 3,785,684 | 0 | C | G | 33.3% | 90.5 / 17.2 | 65 | G225A (GGC→GCC) | dmdC_4 | 3‑methylmercaptopropionyl‑CoA dehydrogenase |
| * | ACB143 | 6,089,343 | 0 | A | C | 33.3% | 68.9 / 11.3 | 55 | S192R (AGC→CGC) | paiB | Protease synthase and sporulation protein PAI 2 |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 3402968 = | 71 (1.070) | 7 (0.110) | 7/250 | 5.2 | 8.3% | coding (364/378 nt) | CJ019_03221 | hypothetical protein |
| ? | ACB143 | = 3443751 | 87 (1.370) | intergenic (‑131/+258) | CJ019_03269/CJ019_03270 | hypothetical protein/hypothetical protein | |||||
| * | ? | ACB143 | = 5696718 | 85 (1.290) | 3 (0.050) | 3/260 | 7.4 | 3.4% | coding (3/1680 nt) | phaC_1 | Poly(3‑hydroxyalkanoate) polymerase subunitPhaC |
| ? | ACB143 | 5702993 = | 83 (1.260) | coding (3/420 nt) | CJ019_05350 | hypothetical protein | |||||