mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 44,301 | (T)9→8 | intergenic (+132/‑359) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 120,983 | (T)9→8 | intergenic (+280/+92) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 179,484 | T→C | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 690,144 | A→G | intergenic (+21/‑2438) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| JC | 4,257,335 | +GCGGCCGC | intergenic (‑281/+7) | CJ019_03991 ← / ← CJ019_03994 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| RA | 5,386,500 | C→A | intergenic (‑509/+1142) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,503 | C→G | intergenic (‑512/+1139) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,506 | 1 bp→GT | intergenic (‑515/+1136) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,507 | +C | intergenic (‑516/+1135) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,510 | 2 bp→TA | intergenic (‑519/+1131) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,513 | +AA | intergenic (‑522/+1129) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,514 | T→C | intergenic (‑523/+1128) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,517 | G→C | intergenic (‑526/+1125) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,519 | G→A | intergenic (‑528/+1123) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,811 | C→T | intergenic (‑820/+831) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| MC JC | 5,390,395 | (CGCAT)2→1 | coding (489‑493/1666 nt) | ligH → | 10‑formyltetrahydrofolate synthetase |
| RA | 5,760,598 | (A)6→5 | coding (781/834 nt) | CJ019_05400 → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB143 | 87981 | 88044 | 64 | 13 [11] | [10] 14 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | ACB143 | 517198 | 517263 | 66 | 15 [6] | [11] 12 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | ACB143 | 674255 | 674380 | 126 | 13 [11] | [6] 15 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | ACB143 | 876901 | 876961 | 61 | 13 [10] | [11] 13 | CJ019_00843/malT | putative protein/HTH‑type transcriptional regulator MalT |
| * | * | ÷ | ACB143 | 1480089 | 1480219 | 131 | 12 [11] | [11] 12 | [degS] | [degS] |
| * | * | ÷ | ACB143 | 1585629 | 1585700 | 72 | 12 [11] | [10] 12 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | ACB143 | 1632573 | 1632684 | 112 | 12 [11] | [9] 17 | czcR_4/CJ019_01536 | Transcriptional activator protein CzcR/hypothetical protein |
| * | * | ÷ | ACB143 | 1923411 | 1923520 | 110 | 13 [11] | [10] 12 | [apeB] | [apeB] |
| * | * | ÷ | ACB143 | 2190988 | 2191045 | 58 | 12 [11] | [0] 55 | PP_RS10045 | LysR family transcriptional regulator |
| * | * | ÷ | ACB143 | 3046219 | 3046316 | 98 | 14 [11] | [11] 12 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | ACB143 | 3944690 | 3944776 | 87 | 16 [11] | [9] 12 | CJ019_03729/CJ019_03730 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB143 | 4163764 | 4163876 | 113 | 12 [11] | [10] 18 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | ACB143 | 4335866 | 4335947 | 82 | 16 [11] | [11] 12 | [btuD_7] | [btuD_7] |
| * | * | ÷ | ACB143 | 4344757 | 4344820 | 64 | 13 [7] | [11] 14 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | ACB143 | 4666884 | 4666985 | 102 | 12 [11] | [7] 12 | [btuB_4] | [btuB_4] |
| * | * | ÷ | ACB143 | 4732409 | 4732469 | 61 | 13 [11] | [11] 13 | gltA/CJ019_04468 | Citrate synthase/hypothetical protein |
| * | * | ÷ | ACB143 | 5250130 | 5250210 | 81 | 12 [11] | [11] 12 | [CJ019_04947] | [CJ019_04947] |
| * | * | ÷ | ACB143 | 5900327 | 5900394 | 68 | 12 [11] | [9] 13 | [CJ019_05521] | [CJ019_05521] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 2191046 = | 0 (0.000) | 49 (1.060) +TAAGAGATATTTTCAG |
34/228 | 0.1 | 100% | intergenic (‑1/‑313) | PP_RS10045/purU_3 | LysR family transcriptional regulator/Formyltetrahydrofolate deformylase |
| ? | ACB143 | = 2191046 | NA (NA) | intergenic (‑1/‑313) | PP_RS10045/purU_3 | LysR family transcriptional regulator/Formyltetrahydrofolate deformylase | |||||