New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 1812813	2 (0.030)	59 (0.960)	34/262	0.5	96.7%	coding (1002/1008 nt)	rpoS	RNA polymerase sigma factor RpoS
	?	ACB143	4527800 =	NA (NA)					intergenic (+730/‑85)	CJ019_04293/CJ019_00703	hypothetical protein/hypothetical protein

CAGTACCCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/1812684‑1812813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCC  >  ACB143/4527800‑4527929                                                                                                                                                                                                                                                                      CAGTACCCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAG                                                                                                                               <  4:245170/135‑1       CCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCA                                                                                                                        >  6:190677/1‑136       CCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCA                                                                                                                        >  8:32378/1‑136       CCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCA                                                                                                                        >  5:17098/1‑136       CCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCA                                                                                                                        >  6:241002/1‑136       CCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCA                                                                                                                        >  7:195727/1‑136       CCTGCAGGATGTAGGGCTGGAGATCGGCATTACACGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAACCGCTTCCGCGAGATCCTAGAAAACAAAGCTCTCTCCAGCGAGTCATTGTTCGTAAGGGATCC                                                                                                                         >  8:157173/1‑135        CTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCA                                                                                                                        <  3:315246/135‑1           GAGGATGGTGGGCTGGAGATCGGCCTGACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCAT                                                                                                                    <  6:59885/136‑1            AGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGAT                                                                                                                           >  5:285972/1‑128            AGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGAT                                                                                                                           <  6:285972/128‑1             GGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCC                                                                                                                  <  1:72300/136‑1                 GTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCC                                                                                                                >  4:123131/1‑134                 GTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATACAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCA                                                                                                               >  5:187328/1‑135                   TGGGCTGGAGATCGGCCTTACCCGTGAACGGGAGCGGCAAATCCAGGAGGAAGGGCTCAAGCGCTTGCGCTAGATCCTTGAAAATAATCGACTGTCCAGCGAGTCATACTTCGTAAGGTATCCATCATCCACACAT                                                                                                            >  2:1737/1‑136                           AGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCG                                                                                                    >  7:250641/1‑136                             ATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTC                                                                                                  >  5:162862/1‑136                             ATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGT                                                                                                   >  4:253162/1‑135                              TCGGCCTTACCCGTGAACGGGTGAGGCAAATCCAGGTGGAAGGGCTCAAGCGCGTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCC                                                                                                 <  8:108340/136‑1                              TCGGACTTACCCGGGAACGGGTGCGGCAAATCCAGGTGGAAGTGCTCCATCTCTTGCGCGAGATCCTTGAACATAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCACCCGTCC                                                                                                 <  8:113650/136‑1                                 GCCTTACCAGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCATGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGCGATCCATCATCCCCACATTCCAACCGTCCAC                                                                                               <  3:293687/135‑1                                  CCTTACACGTGAACGGGTGCTGCAAATCCAGGTGTAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCT                                                                                             <  2:220914/136‑1                                     taaCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCAATCATCCACACATTCCAACCGTCCACCTGAT                                                                                          >  8:85051/4‑136                                       CCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTC                                                                                        >  5:163015/1‑136                                         CGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCAAACCGTCCACCTGATTCCC                                                                                      >  1:346130/1‑136                                                     CGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTC                                                                          >  2:21054/1‑136                                                     CGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTC                                                                          >  5:359812/1‑136                                                              CAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCT                                                                 >  8:263492/1‑136                                                               AGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTT                                                                >  2:85727/1‑136                                                                   GGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCC                                                                                                                  >  5:215821/1‑82                                                                   GGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCC                                                                                                                  <  6:215821/82‑1                                                                         GCTCAAGCGCTTTCGCGAGATCCTTGAAAAGAATGGTCTGTACATCGAGTCATTGTTCGTAAGTGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCTATGCTGTGCTCCCGATTTCTTTCTGGAGCC                                                       <  4:61075/135‑1                                                                           TCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGACCACCTGATTCCCGATGCTGTCCTCCCGATTTCTTTCTGGAGCAAG                                                     >  4:192210/1‑135                                                                                     GCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGAT                                          >  5:18113/1‑136                                                                                     GCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGAT                                          >  7:285867/1‑136                                                                                       GCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGC                                        >  1:38924/1‑136                                                                                       GCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATG                                         >  3:250029/1‑135                                                                                               CTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCG                                  >  4:57351/1‑134                                                                                                    AAAGAATGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCA                            >  8:210532/1‑135                                                                                                        acTGGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTC                       <  6:51816/134‑1                                                                                                           GGTCTGTCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAACGTCGA                     >  7:269542/1‑135                                                                                                                 TCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAA                 <  8:325694/133‑1                                                                                                                 TCCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCCGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAA                 <  5:221314/133‑1                                                                                                                  CCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTTGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTC              >  8:89896/1‑135                                                                                                                  CCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAA                 <  3:320254/132‑1                                                                                                                  CCAGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTACACCTGATTCACGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGACCGCCATGATGCGCCCCGCCAGCAAAGTCGAAAAAGTC              >  8:334525/1‑135                                                                                                                    AGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC           <  5:190677/136‑1                                                                                                                    AGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC           <  6:163015/136‑1                                                                                                                    AGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC           <  6:136295/136‑1                                                                                                                    AGCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC           <  8:341353/136‑1                                                                                                                     GCGAGTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC           <  3:253162/135‑1                                                                                                                         GTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTA      >  1:281566/1‑136                                                                                                                         GTCATTGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCT       >  3:145493/1‑135                                                                                                                            ATTGTTAGTAAGGGATCCATCATCCCCACATTCCAACCGTCAACCTGATTCCCGATGCTGTGATCCAGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCC   >  7:326102/1‑136                                                                                                                              TGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCC  >  2:112804/1‑135                                                                                                                              TGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCC  >  6:121865/1‑135                                                                                                                              TGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCC   >  4:249287/1‑134                                                                                                                              TGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCAACCCC  >  2:158081/1‑135                                                                                                                              TGTTCGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTATGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTATACATATACCCC  >  8:310606/1‑135                                                                                                                                                                                                                                                                      CAGTACCCTGGAGGATGTTGGGCTGGAGATCGGCCTTACCCGTGAACGGGTGCGGCAAATCCAGGTGGAAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/1812684‑1812813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCC  >  ACB143/4527800‑4527929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.