Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 5,693,183 | 0 | T | G | 47.1% | 4.6 / 14.5 | 51 | R238R (CGT→CGG) | pyrC' | Dihydroorotase‑like protein |
Reads supporting (aligned to +/- strand): ref base T (10/17); new base G (4/20); total (14/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.27e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
AGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCAC > ACB143/5693051‑5693300 | aGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGgc > 5:169634/1‑136 (MQ=255) ccATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTTCGTGCGCGCGTCAGCCACATCACCACCCCCCCTGGcgcgcg > 1:20017/1‑136 (MQ=255) cgggCCAGCTTCCTCGGCCTCCGGGGATTCCCGTAGCCCGCGTAACCCGTGGCCATGGCGCGCACCCGGCTGGTGGGGC‑AACAGAGCGGCGGGCGCGGGCACTTCACCCACATCCCCCGCGCCCGTGGCGCGCGGc < 6:262765/134‑1 (MQ=255) ccAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGCACGTCAGCCAGATCCCCAGCCCCCGTGGCGCGCGGCTg > 4:245850/1‑134 (MQ=255) gcgtCCTCGCCCGGCCGGGCATCCGGTCTCGCGCCTAAAGCGTGCCCCGGGCGCGCAACCTGCTCGTGGGGC‑AACAGCGCGGCGGGCGTGCGCACTTCACCCACACCACCCGCGCCCGTGGCGCGCGGCTGATCg < 4:281783/132‑1 (MQ=255) cTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGGCAGTCCGCCAGCTCACCAGCGCCCGGGGCGCGCGGCTGGACgcc > 6:206727/1‑136 (MQ=255) ttCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑CACAGAGCGGCGTGCGGGCGGCCTTGAGCCCGATCACCCGCGCCCGGGGCGCGCGGCTGCTCgccc > 8:284792/1‑136 (MQ=255) ccgcGGCCTGCCGGGCAGCCCGGCGAGCGCCTAAACGGTGGCCCTGGCGCGCACCCTGCTGCTGGTGC‑AACAGAGCGGCGGGCGTGCGCACTTCCGCCAGAGCACCCGCCCCCGTGGCGCGCGGCTGATCgcccag < 8:120355/133‑1 (MQ=255) cTCGGCCTGCCGGGCATCCCGTAGAGCGCCTAAACCGGGGCCCTGGCGCGCAACCTGCTGCTGGTGC‑AACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGGGGCGCGCGGCTGATCgcccag < 2:105415/135‑1 (MQ=255) cggCCGGGCAGCCCGGTGAGCGCCGAACCCGTGGCCCTGGCGCGCAACGTGCGGTTGGGGG‑AACCGCGGGGCGTGCTGGCTCACTTCCGCCTGATCCCCTGCGCCGGTGGCGCGCGGCTGATCGcccaggcccagg < 2:20017/134‑1 (MQ=255) gggCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCGGGTGG‑AACAGTGCGGCGGGCGTGCGCAGTTCACCCAGATCCCCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTg < 6:368280/136‑1 (MQ=255) agcgcgcCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGGGGGGGGCCGTAAGCCCGCTCACCCGCGCCCCTGGGGCGCGGCGGGTAGCCCCCGCCCCGGGCGGGGGCCGGGCggg > 1:243810/4‑135 (MQ=255) gcgcCTAACCGGGGGCCCTGGGGCGCAACCTGCGGCGGGGGC‑ACCCGCGGGGGGTGCGGGCGCACTTCCCCCAGAACCCCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAc < 5:218187/136‑1 (MQ=255) gcgcCGAAACGGGGGCCCTGGCGCGCAACCGGCGGCGGGGGG‑AACCGAGCGGCGGGGGGGCGCACTTCCGCCAGAGCACCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAc < 8:45024/136‑1 (MQ=255) gcgcCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGGGTGGGCCCATCAGCCACATCACCCCCGCCCGGGGCGCGCGGCGGATCGCCCCGGCCCCCGGCGTGGGGCGGCCGGTAAc > 1:60067/1‑136 (MQ=255) cgcCGAAACGGGGGCCCTGGCGCGCAACCTGCTGGTGGTGC‑AACAGCGCGGCGTGCGTGCGCACTTCAGCCAGATCCCCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAAc < 4:126089/135‑1 (MQ=255) cGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGCCCATAAGCCAGATCACCCGCCCCCGTGGCGCGCGGCGGATAGCCCCGGCCCCGGCCGTGGGCCTGCCGGTGAccgc > 3:259999/1‑135 (MQ=255) gggggCCCTGGCGCGCAACCGGCTGGGGGTGT‑AACCGAGCGGCGTGCGTGCGCACTTCCGCCATAACACCTGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 7:157594/133‑1 (MQ=255) ggTGGCCCGGGCGCGCACCCTGCTGCTGTGGG‑AACAGAGCGGCGTGCGTGGGCACTTCCGCCACATCACCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 7:278209/135‑1 (MQ=255) cgtggccgtggcGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 6:158536/136‑1 (MQ=255) cggggCCGTGGCGCGCAACCTGCGGCGGGTGC‑AACTGAGCGGCGTGCGTGCGCAATACACCCAGAACACCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 1:205803/133‑1 (MQ=255) cGTGGCCCTGGCGCGCAACATGCTGGTGGGGG‑AACAGAGCGGGGGGCGTGCGCACTTCACCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 2:209798/136‑1 (MQ=255) gTGGCCCTGGCGCGCAACCTGCTGCGGGTGG‑AACAGAGCGGCGGGCGTGCGCACTTCAGCCAGATCCCCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTa < 4:122519/135‑1 (MQ=255) cTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGCACATCAGCCAGATCCCCCCCCCCCGTGGCGCGCGGCTGATCGCCCAGGCCCCGGCCTGGGGCCGGGCGGTTACCGCCGCGGTGGCGCt > 4:303779/1‑134 (MQ=255) tGGCGCGCAACTTGATGC‑GGTGGTAACTTAGGGGGGTGCTTTGGCACTACAGCCAGATCCCCAGCCCCGGTGGGGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGt < 4:181198/135‑1 (MQ=255) gcgcgcAACGTGCGGCTGGTGG‑AACAGAGCGGCGGGCGGGCGCACTTCAGCCTGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTAc < 8:302612/135‑1 (MQ=255) gcgcgcAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGGGCGCACTGCAGCCACACCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTAc < 3:59387/135‑1 (MQ=255) gcgcAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGGGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCGGATCGCCCCGGCCCCGGCCGTGGGCCTGCCGGGAACCGCCGATGTAGCGCTGGTCCAg > 2:282381/1‑136 (MQ=255) cgcAACCTGCGGCTGGTGT‑AACTCAGCGGGGTGCGGGCGCACTTCCCCCACACCCCCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAg < 4:49100/135‑1 (MQ=255) g‑AACAGAGCGGCGTGCGTGCGCCCTTCAGCCAGATAACCCCCGCCCGGGGCGCGCCGCGGCGAGCCCACGCCCCGGGCGTGGGCCAGCCGGTAACCCCCGAAGTAGCGCAGTACCAGCGGATCCGCCCggccccg > 4:200397/1‑130 (MQ=255) gcggcgTGCGTGCGCACTTCAGCCAGATCACCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcg < 7:84715/136‑1 (MQ=255) gcggcgGGCGTGCGCACTGCACCCCGATCACCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcg < 7:8128/136‑1 (MQ=255) gggcgggcgggcgAACTTCAGCCACAGCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcg < 3:72912/134‑1 (MQ=255) cggcgTGCGTGCGCACTTCACCCAGATCACCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcgc < 2:62910/136‑1 (MQ=255) cggcgTGCGGGCGCACTTCCGCCAGATCACCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTgcg < 3:288716/135‑1 (MQ=255) gcgtgcgtGCGCACTTCAGCCAGATCACCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCGTGGGCCTGCCGGTAACCGCCGATGTAGCGCGGTACCAGCTGATCCGCACGGCCGAGTCGCGgcgc > 8:84715/1‑134 (MQ=255) gcgtgcgtGCGCACTTCAGCCAGAGCCCCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGa < 1:286925/136‑1 (MQ=255) gtgcgtggGAAGTTCTGCCTGATCACCTGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 7:54081/136‑1 (MQ=255) gggggggcgcACTCCACCCACACCACCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 5:33148/130‑1 (MQ=255) gggcgtgcgCACTTCAGCCAGACCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 2:239073/134‑1 (MQ=255) gggcgggcgCACTGCCCCCAGATCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 6:275578/134‑1 (MQ=255) gggcgggcgCACTGCAGCCAGACCACCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 6:117289/134‑1 (MQ=255) tgcgtgcgAACTTCCGCCACATCACCAGCGCCGGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGtt < 7:94246/136‑1 (MQ=255) ggggtgggCACTACAGCCACTGCCCCCGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGtt < 8:120476/133‑1 (MQ=255) ggcgggcgCACTGCCGCCACATCACCAGCGCCCGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 4:315423/134‑1 (MQ=255) ggcggccgcACTTCCGCCCGAACCCCCCCGCCGGGGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGt < 4:153354/129‑1 (MQ=255) ggcgaACTTCAGCCAGATCACCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTcc < 8:88783/135‑1 (MQ=255) gcccACTGCAGCCACAGCACCTGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCa < 1:267012/133‑1 (MQ=255) cAGCCCGACCACCCGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTa < 2:15692/135‑1 (MQ=255) aGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTAcc > 5:272328/1‑136 (MQ=255) ccAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCAc > 8:224891/1‑136 (MQ=255) | AGGTGCCATGGCCAGCTTCCTCGGCCTGCCGGGCATCCCGGAGAGCGCCGAAACCGTGGCCCTGGCGCGCAACCTGCTGCTGGTGG‑AACAGAGCGGCGTGCGTGCGCACTTCAGCCAGATCACCAGCGCCCGTGGCGCGCGGCTGATCGCCCAGGCCCAGGCCTTGGGCCTGCCGGTAACCGCCGATGTAGCGCTGTACCAGCTGATCCTCACGGACGAGTCGCTGCGCGAGTTCTCCAGCCTGTACCAC > ACB143/5693051‑5693300 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |