New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	2170758 =	59 (0.980)	42 (0.710)	26/238	NT	59.1%	intergenic (‑773/‑64)	arsR1/CJ019_02060	Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16
	?	ACB143	5563630 =	0 (0.000)					coding (1047/1902 nt)	mutL_2	DNA mismatch repair protein MutL

AGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2170880‑2170758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTTCA  >  ACB143/5563630‑5563763                                                                                                                                                                                                                                                                   AGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGT                                                                                                                           <  3:108245/136‑1   GCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGC                                                                                                                         >  4:91947/1‑136                    TAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCG                                                                                                        >  7:74413/1‑136                    TAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCG                                                                                                        >  3:51037/1‑136                           CGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGT                                                                                                   <  7:255685/134‑1                            GTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACA                                                                                                >  2:241987/1‑136                            GTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTAC                                                                                                 >  7:101634/1‑135                              TCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTACCCACGGTCACGACGACCAGAAGGTTAGACAACCTCGGGCGTTTTAACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACA                                                                                                >  3:89635/1‑134                               CGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGCCGTACATCG                                                                                             >  5:300871/1‑136                               CGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCG                                                                                             >  4:304831/1‑136                                       ACCTTCTATGAATCGCATCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                                       <  5:260820/134‑1                                       ACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGC                                                                                     <  7:151735/136‑1                                       ACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                                       <  1:284756/134‑1                                       ACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                                       <  2:340480/134‑1                                       ACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                                       <  7:62349/134‑1                                       ACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                                       <  4:146760/134‑1                                             GATGAATCGCTTCATGATTGGCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT                                                                                <  7:333840/135‑1                                             GATGAATCGCTTCATGATTGACCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT                                                                                <  1:307716/135‑1                                               TGAATCGCTTCATGATTGTCCCCTCGGGCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCTCACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCA                                                                             <  5:128094/136‑1                                                      CTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACAGCAGCAG                                                                                                                             <  7:129354/81‑1                                                      CTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACAGCAGCAG                                                                                                                             >  8:129354/1‑81                                                          ATGATTGTCCCCACGGTCAGGACGACCTGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC                                                                  <  3:16455/136‑1                                                          ATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC                                                                  <  1:3538/136‑1                                                                    CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT                                                        >  2:179667/1‑136                                                                    CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT                                                        >  2:32820/1‑136                                                                    CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT                                                        >  8:369529/1‑136                                                                    CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT                                                        >  2:55755/1‑136                                                                    CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAT                                                        >  2:40191/1‑136                                                                    CCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTATTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGCCCAAGCCACCGTGCAATGTGCCATACAGGAAGTCA                                                         >  2:357220/1‑135                                                                             CGACGACCAGATGGTTAGACATCCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTAGATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGC                                               <  6:68851/136‑1                                                                             CGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGC                                               <  2:200240/136‑1                                                                              GACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCG                                              >  5:341034/1‑136                                                                               ACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGC                                             >  1:143652/1‑136                                                                                          ggTAGACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAA                                  <  8:334163/134‑1                                                                                              GACAACCGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGT                              <  6:384749/136‑1                                                                                                    CGCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCATCGCGGAACCGTACTTCA                        >  2:374640/1‑136                                                                                                     GCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCAT                       <  1:179667/136‑1                                                                                                     GCGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCAT                       <  5:360310/136‑1                                                                                                      CGGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATG                      >  4:236439/1‑136                                                                                                       GGGCGTTTTCACACAGTCTGGTACGGCAGCAGGTGCGGCCACCTGGTCTTCCGGACGTACATAGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGATCGCCCTTCGCGGAACCGTACTTCATGC                     >  4:218581/1‑136                                                                                                        GGCGTTTTCAGACAGGCTGGTACGTCAGATGGTGCGGCCAGCTGGTCTTCCGGACGTACCTCTGCCCAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAAGCGTACTTCATGCT                    <  2:238919/136‑1                                                                                                                CACACAGTCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGG             <  2:143652/135‑1                                                                                                                        CTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTT    >  5:167499/1‑136                                                                                                                          GGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTTCA  >  4:6512/1‑136                                                                                                                          GGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTTCA  >  8:238022/1‑136                                                                                                                                                                                                                                                                   AGGCACTCCGGCAGCAATGTAACCTGCGTTCGAGCCTCACCTTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2170880‑2170758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGGGTGCACGTTCA  >  ACB143/5563630‑5563763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.