| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | = 2172434 | 124 (2.050) | 34 (0.570) | 21/240 | NT | 35.6% | intergenic (+176/+92) | CJ019_02060/CJ019_02061 | IS1182 family transposase ISPpu16/hypothetical protein |
| ? | ACB143 | = 5563631 | 0 (0.000) | coding (1046/1902 nt) | mutL_2 | DNA mismatch repair protein MutL | |||||
AAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/2172301‑2172434‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC < ACB143/5563631‑5563498 AAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTA > 8:311342/1‑136AAGAACGACTCACATAGACACATGCGCCCAAGCACGTCGATATCAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGAGCACTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTA > 3:365148/1‑136 CGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGGTTTCACACAGCCTGGTACCT > 6:300482/1‑134 ACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCA < 1:207737/136‑1 CAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAG > 5:228761/1‑134 GGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGG > 1:124574/1‑136 ATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAG < 1:375957/136‑1 TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGGGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGT > 5:88649/1‑136 TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGT > 1:100293/1‑136 TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGT < 6:354624/136‑1 TTTGAGCTAAACCACGCAATATCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCAATTCTCTTGTTTTCAAACAGCCAGGAACCTGAGCTGGTTCGCCCCACCGGCCAGCAGCCCGGTGAGT > 1:322082/1‑136 AACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCC > 8:304524/1‑135 AATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGA > 1:25245/1‑135 TGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTC < 8:72124/135‑1 GGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGC > 5:220639/1‑136 AAGCCTCTCTAGATCCCTGCGCCCATCACCGCATTTCGCGTTGTGTCACACAGCCTGGTACCTGAGCTGGGTCGCACCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAACTGCGCCTGGCCTCGCCGG < 7:192683/136‑1 TCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTG > 7:258473/1‑135 TCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTT < 8:258473/134‑1 CCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTC > 4:187960/1‑136 TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTC > 6:348519/1‑134 TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGGGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTC > 3:42452/1‑134 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGACCAGCCTCGAGCC > 4:314571/1‑136 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC > 6:110115/1‑136 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC > 6:23472/1‑136 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC > 6:384236/1‑136 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCC > 2:409863/1‑136 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTT > 1:376779/1‑121 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTT < 2:376779/121‑1 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTT < 6:247726/121‑1 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTT > 5:247726/1‑121 CCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCC > 3:41307/1‑136 CCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCC > 7:375300/1‑136 AACGCATTTCGCGTGTTTTCACACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCCGTGCTTGAACCGACTCGCGCCCCCCAAC > 8:132653/1‑136 TGTTTTCACACAGCCTTGTACGTGAGCTGGTTCGCCCGACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAAGAGCCTCGAGCCCCGCAACAGTCGTTTTCCAA < 6:128043/136‑1 ACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAG < 2:124574/136‑1 ACAGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAG < 8:368753/136‑1 AGCCTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCG < 5:45919/136‑1 CTGGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCG > 4:244355/1‑136 GGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC > 2:401190/1‑136 GGTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC > 7:295783/1‑136 AAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > ACB143/2172301‑2172434‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACCTGAGCTGGTTCGCCCCACCGGCCAGCAGGCCGGTGAGTTCGGGCCCCAGGGTGAAATGCGCCTGGCCTCGCCGGTGCTTGAACAGCCTCGAGCCCCGCAACAGTCGTTTTCCAATGGTGGCAGCGGCGCC < ACB143/5563631‑5563498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |