Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB143 | 4,091,127 | C→T | 7.0% | R59R (CGG→CGA) | dmlR_15 ← | HTH‑type transcriptional regulator DmlR |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 4,091,127 | 0 | C | T | 7.0% | 188.6 / 3.5 | 57 | R59R (CGG→CGA) | dmlR_15 | HTH‑type transcriptional regulator DmlR |
Reads supporting (aligned to +/- strand): ref base C (19/34); new base T (2/2); total (21/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.20e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.46e-01 |
GCAACGCCAGACGCAGACGCCCACGAACCGTTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGG > ACB143/4090994‑4091262 | gCAACGCCAGACGCAGACGCCCACGAACCGTTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCcg > 7:182724/1‑136 (MQ=255) cAACGCCAGACGCAGACGCCCACGAACCGTTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCcgc < 8:182724/136‑1 (MQ=255) cAACGCCAGACGCAGACGCCCACGAACCGTTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCcgc < 4:232722/136‑1 (MQ=255) cAACGCCAGACGCAGACGCCCACGAACCGGTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCcgc < 2:401360/136‑1 (MQ=255) ccAGACGCAGACGCCCACGAACCGTTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACt < 4:146319/136‑1 (MQ=255) cagacgcagacgCCCACGAACCGTTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTg > 6:360862/1‑136 (MQ=255) ttGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAg < 8:229785/136‑1 (MQ=255) tagCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAg < 6:337267/134‑1 (MQ=255) ccGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCcg < 3:388312/136‑1 (MQ=255) cTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGTCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGtctc > 6:355605/1‑136 (MQ=255) cTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGTCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGtctc > 6:361463/1‑136 (MQ=255) tCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTc < 5:388769/107‑1 (MQ=255) tCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTc > 6:388769/1‑107 (MQ=255) tCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCCCCCGGCGAATGCCCAGCCGCGTctct > 5:114403/1‑135 (MQ=255) gCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAg > 3:288675/1‑136 (MQ=255) gCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAg > 6:313983/1‑136 (MQ=255) ccTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCAc < 8:217582/135‑1 (MQ=255) ctTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGAAAAGCGCAGCTGCCGCCTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCCCTCAg > 6:25000/1‑136 (MQ=255) ttCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCa < 8:74851/134‑1 (MQ=255) ttCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAgg > 7:313134/1‑136 (MQ=255) ttCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAgg < 4:247898/136‑1 (MQ=255) cctccGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAgg < 7:319037/134‑1 (MQ=255) cctccGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAgg < 6:192777/134‑1 (MQ=255) cctccGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCACATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAgg < 6:184300/134‑1 (MQ=255) gCTTCGGGAATCAGCCGGCTATCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGAGTACTGCGCTCCACCAGGCGAATGCCCAGCCTCGTCTCTAAATCACTCAGGCGTTTCg < 7:333188/136‑1 (MQ=255) cTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGTCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGa < 5:361463/136‑1 (MQ=255) cTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGTCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGa < 5:355605/136‑1 (MQ=255) cTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGa < 1:276526/136‑1 (MQ=255) cTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGa < 4:51245/136‑1 (MQ=255) cTTCGGCAATCAGCCGGCTAGCCTAGAGAAGCTTGGCGACCAGCCGCTCGCCCTCATCGGTAAAGCTCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGa < 2:166326/136‑1 (MQ=255) cGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCTTCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACa < 3:179500/135‑1 (MQ=255) cGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAg > 8:249218/1‑136 (MQ=255) cGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGGTTCGACAg > 3:286240/1‑136 (MQ=255) cGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGAGTTTCGACAg > 3:280687/1‑136 (MQ=255) gCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCa > 4:332662/1‑136 (MQ=255) cAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCAc > 7:27406/1‑136 (MQ=255) aGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGCCAGCACCGTAg > 6:319462/1‑136 (MQ=255) ccAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCcggcgg < 3:99920/135‑1 (MQ=255) ccGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGgcagca < 2:315124/136‑1 (MQ=255) ccGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGgcagca < 6:244357/136‑1 (MQ=255) cGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCCGGCGTTTCGACAGCACAGTAGGGTGGCGATCCAGTTGCCGCCCGGCGGCAGCAAACGa < 6:266703/136‑1 (MQ=255) cGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGa < 1:369142/136‑1 (MQ=255) cGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGa < 3:815/136‑1 (MQ=255) cGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGGAGGGTGGCCCTCCAGTTGCCGCCCGGCGGCAGCAAACGa > 8:82231/1‑136 (MQ=255) gCCCTCTTCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTATATCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGa < 6:319679/135‑1 (MQ=255) gCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGa < 1:287002/135‑1 (MQ=255) gCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGa < 4:245861/135‑1 (MQ=255) ccTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGcc < 8:74260/136‑1 (MQ=255) ccTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGcc < 8:89551/136‑1 (MQ=255) aTCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTAGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCt < 5:58237/134‑1 (MQ=255) tAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATa < 1:160532/136‑1 (MQ=255) gcAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGc < 4:83051/136‑1 (MQ=255) cAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACACAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGcc < 5:313983/136‑1 (MQ=255) aGCTGCCGCGTACTGCGCTCCCCCAGGCGAATGCCCAGCCGCGTCTCTAAAGCCCGCAGGCGGTTCGCCAGCCCCGTAGGGTGGCGCTCCATTTGCCGCCCGGCGGCAGCAAACCACCCCTGCGCAGCCAAGGccc > 8:334260/1‑135 (MQ=255) aGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTGAGGAGTTTCGACAGCACAGTAGGGTGGCGCTGAAGTTGCCGCCCGGCGGCAGCAAACGAGACGTGCTCATACAAGGc > 8:329096/1‑134 (MQ=255) aGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGc > 5:343820/1‑134 (MQ=255) cTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCCGCAAACGAGCCCTTCTGATACAGCGCcagc > 6:322378/1‑136 (MQ=255) ccGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCCGCAgg > 2:266099/1‑136 (MQ=255) ccGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAgg > 2:360480/1‑136 (MQ=255) ccGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAgg > 4:183086/1‑136 (MQ=255) ccGCGTACTGCGATCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTATCGACAGCACCCTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGCCCAGCAgg > 2:221424/1‑136 (MQ=255) | GCAACGCCAGACGCAGACGCCCACGAACCGTTGCCGCACCTTCGGCTGCCTCTTCCTCCGCTTCGGCAATCAGCCGGCTAGCCTCGAGAACCTTGGCTACCAGCCGCTCGCCCTCATCGGTAAAGCGCAGCTGCCGCGTACTGCGCTCCACCAGGCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGG > ACB143/4090994‑4091262 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |