New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	1290801 =	NA (NA)	46 (0.770)	24/258	0.9	NA	coding (936/1329 nt)	CJ019_01212	IS110 family transposase ISPpu9
	?	ACB143	= 1291580	NA (NA)					intergenic (+386/+43)	CJ019_01212/CJ019_01213	IS110 family transposase ISPpu9/hypothetical protein

GCTTGAGTGCTTGCGCTGCTCGATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/1290937‑1290801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG  <  ACB143/1291580‑1291453                                                                                                                                                                                                                                                                           GCTTGAGTGCTTGCGCTGCTCGATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATC                                                                                                                                   >  6:177752/1‑136  CTTGAGTGCTTGCGCTGCTCGATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCT                                                                                                                                  <  4:21246/136‑1  CTTGAGTGCTTGCGCTGCTCGATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCT                                                                                                                                  <  3:182575/136‑1  CTTGAGTGCTTGCGCTGCTCGATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCT                                                                                                                                  <  3:111357/136‑1    TGAGTGCTTGCGCTGCTCGATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTC                                                                                                                                >  2:213842/1‑136                      GATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAAC                                                                                                              <  5:203675/136‑1                      GATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAAC                                                                                                              <  3:185297/136‑1                                   GGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTC                                                                                                 >  6:272121/1‑136                                            ACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAA                                                                                         >  1:293/1‑135                                                   AGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGG                                                                                 >  1:77691/1‑136                                                   AGTCGATGACAGCCGGAAATTCGGGTAGGGGGAGCCAGACCAAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCATCTATCAAACAAAAGATAACCCACTCTTCTTTCTAGCGAAAAAAACAGG                                                                                 >  6:191585/1‑136                                                    GTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGC                                                                                <  3:120349/136‑1                                                     TCGATGACCGCCGGAAATTCGGGTTGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACATAAGATAACCGACTGTTCTTTCTAGCGAAAAAAACAGGCG                                                                               <  8:93342/136‑1                                                     TCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG                                                                               <  4:331474/136‑1                                                     TCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGC                                                                                <  5:272121/135‑1                                                        ATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGC                                                                            >  1:310594/1‑136                                                           ACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGG                                                                          <  8:287741/135‑1                                                             CGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGT                                                                       <  2:312625/136‑1                                                                  GAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG                                                                               >  8:105289/1‑123                                                                  GAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG                                                                               <  7:105289/123‑1                                                                            TAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGT                                                        <  3:332095/136‑1                                                                              GGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGATGCGTGATAGATCTTCTATCAAACAATAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  5:191585/136‑1                                                                              GGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAATAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  4:7905/136‑1                                                                              GGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  1:80987/136‑1                                                                              GGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  8:23803/136‑1                                                                              GGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  2:293/136‑1                                                                              GGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  6:364781/136‑1                                                                              GGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  1:219740/136‑1                                                                              GGGGGAGCCAGTACCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  5:333052/136‑1                                                                              GGGGGAGACAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGAAAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                      <  2:329818/136‑1                                                                              GGGGGAGACAGTCCAAACCAAGAGCAGAAGTGCAGTTAGGACGGGAAGCGTGATAGATCTTCTATCAACCAAAAGATAACACACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGTGTCAATGGCGGCGAAGTGT                                                      <  7:101479/136‑1                                                                                GGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTC                                                    <  6:163480/136‑1                                                                                       AGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTC                                             >  5:106697/1‑136                                                                                              ACCAAGAGCAGAAGTGCTGTGAGGACTGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGT                                      <  6:299288/136‑1                                                                                              ACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGT                                      <  4:318102/136‑1                                                                                              ACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTATTTCTAGCTAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGT                                      <  4:338653/136‑1                                                                                                 AAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGT                                   >  5:281213/1‑136                                                                                                 AAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGT                                   >  6:48301/1‑136                                                                                                            TGCTGTGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTAACTCTTCTATACGTGGTCACAGCAAGCT                        >  1:311950/1‑136                                                                                                                 TGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCC                   >  2:306667/1‑136                                                                                                                 TGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCC                   >  1:82735/1‑136                                                                                                                 TGAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGC                    <  3:277208/135‑1                                                                                                                  GAGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG                  <  1:148953/136‑1                                                                                                                   AGGACGGGAAGCGTTTAAGATCTTCTATCAAACAAAATATAACCCACTGTTCTTGCTACCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTATATACGTGGTCACAGCAAGCTGTGCCG                  <  5:74679/135‑1                                                                                                                   AGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG                  <  8:115225/135‑1                                                                                                                   AGGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCG                  <  1:33721/135‑1                                                                                                                    GGACGGGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGA                 >  1:1381/1‑135                                                                                                                         GGAAGCGTGATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGA           >  3:268311/1‑136                                                                                                                                  ATAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG  <  2:283394/136‑1                                                                                                                                   TAGATCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG  <  2:366435/135‑1                                                                                                                                                                                                                                                                           GCTTGAGTGCTTGCGCTGCTCGATTGACTATTTTGGGCCCACCACCTGCCAGTCGATGACCGCCGGAAATTCGGGTAGGGGGAGCCAGTCCCAACCAAGAGCAGAAGTGCTGTGAGGACGGGAAGCGTGATAGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/1290937‑1290801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCG  <  ACB143/1291580‑1291453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.