New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	2155685 =	81 (1.340)	56 (0.930)	29/262	0.6	46.9%	coding (301/369 nt)	tmk_1	Thymidylate kinase
	?	ACB143	= 2220562	46 (0.760)					coding (36/369 nt)	tmk_2	Thymidylate kinase

AACAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2155813‑2155685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAAAATGCCAACCAT  <  ACB143/2220562‑2220431                                                                                                                                                                                                                                                                       AACAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCT                                                                                                                               >  6:218442/1‑136 AACAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCT                                                                                                                               >  1:342846/1‑136   CAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTG                                                                                                                             <  8:290886/136‑1   CAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTG                                                                                                                             <  2:48292/136‑1          GAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCG                                                                                                                       <  1:73414/135‑1                TGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                                <  5:174633/136‑1                TGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGA                                                                                                                <  2:139436/136‑1                   TACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGT                                                                                                              >  1:286796/1‑135                   TACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGT                                                                                                              >  6:83587/1‑135                     CGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAA                                                                                                           <  4:335914/136‑1                          CCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATCTAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAA                                                                                                      <  3:299675/136‑1                          CCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAA                                                                                                      <  2:342846/136‑1                          CCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAA                                                                                                      <  2:356850/136‑1                             TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTATCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   <  7:204146/136‑1                             TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   >  7:339464/1‑136                             TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   <  6:71276/136‑1                             TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   <  6:301061/136‑1                             TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   <  3:352192/136‑1                             TGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   >  6:11870/1‑136                             TGATCTACGCTGAATCGCCTGAATTTACTGGCTTAGGCGACCAACCCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAATCAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   >  8:3597/1‑136                               ATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACAT                                                                                                  <  1:55059/135‑1                               ATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACA                                                                                                   >  8:307377/1‑134                                TCTACGCTGAATCTCCTGATTTTACTGGCTTAGGCGTCCAAACCTAGCTCAACATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTTTATTCGTTCTTGAGTAAATGTAAACATA                                                                                                 <  1:167198/135‑1                                TCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATA                                                                                                 <  2:54218/135‑1                                    CGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATA                                                                                                 <  8:165073/131‑1                                    CGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATA                                                                                                 <  4:344055/131‑1                                      CTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTAT                                                                                          <  4:25598/136‑1                                          ATCGCCTGATTTTACTTGCTTAGTGGTCCTAAGCTATCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGGGTCTTGTATTCGTTCTTGAGTAATTGTAAACATAGGCCTATTATA                                                                                      <  3:37998/136‑1                                            CGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACG                                                                                    >  7:332439/1‑136                                            CGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACG                                                                                    >  7:131429/1‑136                                            CGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACG                                                                                    >  5:247217/1‑136                                            CGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACAT                                                                                                  <  4:341238/122‑1                                            CGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACAT                                                                                                  >  3:341238/1‑122                                                 GATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCT                                                                               >  1:230042/1‑136                                                          GGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTATTGAGTAAATGTAAACATAGGCCTATTATACGTTACTTACTAAGAA                                                                      >  5:259455/1‑136                                                           GCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAAT                                                                     <  7:176730/136‑1                                                                GGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAA                                                                <  5:218442/136‑1                                                                 GCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAA                                                                <  4:117447/135‑1                                                                   GACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACAT                                                             <  7:257292/136‑1                                                                        AACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGT                                                         >  4:216338/1‑135                                                                          CCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCT                                                      <  5:333239/136‑1                                                                          CCTAGCTCACCATCAAAATTCTCTTGATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGGCTATTATACGTTCCTTTCTAAGAATGAAAACATGAGCTCT                                                      <  3:313789/136‑1                                                                                       CAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATTTAAACATGAGTTCTACATCCCTCTAAC                                         >  2:223804/1‑136                                                                                       CAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAAC                                         >  2:252788/1‑136                                                                                       CAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAAC                                         >  2:247418/1‑136                                                                                       CAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTACTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAAC                                         >  6:321704/1‑136                                                                                       CAAATTTCTCTTCATGTTTACCTTGAGCAATAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAAAATGAGTTCTACATCCCTCTAAC                                         >  1:277222/1‑136                                                                                       CAAATTTCTCTTCATGTTTACCTTGAGAATTAAAAGAATATAGCGCGTCTTGTAATCGTTATTGAGTAAATGTAAACATAGGCCTATTATACTTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCATCTAAC                                         >  7:159148/1‑136                                                                                                 TTCATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATT                               >  7:83610/1‑136                                                                                                    ATGTTTACCTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAATAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGG                            >  4:111207/1‑136                                                                                                            CTTGAGCATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTG                      >  5:167242/1‑134                                                                                                                   ATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAA              >  1:104380/1‑135                                                                                                                   ATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAA              >  6:181677/1‑135                                                                                                                   ATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCT                       >  6:201109/1‑126                                                                                                                   ATTAAAAGAATATAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCT                       <  5:201109/126‑1                                                                                                                               TAGGGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAAAATGCCAACCAT  >  6:240265/1‑135                                                                                                                                                                                                                                                                       AACAGCTTTGAGCAATGCTACGCTGCCATGATCTACGCTGAATCGCCTGATTTTACTGGCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  ACB143/2155813‑2155685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGTCTTGTATTCGTTCTTGAGTAAATGTAAACATAGGCCTATTATACGTTCCTTACTAAGAATGTAAACATGAGTTCTACATCCCTCTAACCCCCGAAATTCGGGGCCTGGAGCCAAAAATGCCAACCAT  <  ACB143/2220562‑2220431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.