New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 3376605	81 (1.340)	56 (0.930)	31/260	0.4	56.7%	coding (501/546 nt)	CJ019_03184	hypothetical protein
	?	ACB143	= 5775229	5 (0.080)					coding (1540/2151 nt)	CJ019_05409	hypothetical protein

ACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/3376472‑3376605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCGGGCTGCCTCCAG  <  ACB143/5775229‑5775096                                                                                                                                                                                                                                                                              ACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTA                                                                                                                                      >  2:107947/1‑136    TTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAA                                                                                                                                   >  8:21188/1‑136      CCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAAC                                                                                                                                  <  5:350634/135‑1         CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACC                                                                                                                              >  2:182911/1‑136         CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACC                                                                                                                              >  3:42964/1‑136         CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACC                                                                                                                              >  5:150210/1‑136         CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACC                                                                                                                              >  7:73365/1‑136         CAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACACGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATCACCCCTACAACAACC                                                                                                                              >  1:24062/1‑136                  GCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGG                                                                                                                     <  2:225538/136‑1                  GCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGG                                                                                                                     >  2:362981/1‑136                            TTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCT                                                                                                           <  8:290114/136‑1                              GGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTG                                                                                                          >  4:87188/1‑135                                        CAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCG                                                                                               <  6:168751/136‑1                                        CAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCG                                                                                               <  5:363579/136‑1                                            CTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCC                                                                                           >  4:243958/1‑136                                               TGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCG                                                                                          <  7:42466/134‑1                                               TGCTGAGCAGGGCGTCTAATCTACTCGTTTAAATACAATAGCGTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACCACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCG                                                                                          <  8:95474/134‑1                                                   GAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATA                                                                                    >  2:30590/1‑136                                                       AGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCA                                                                                <  4:138297/136‑1                                                       AGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCA                                                                                <  5:193230/136‑1                                                       AGGGCTTATAATCTACTCTTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCA                                                                                <  2:157146/136‑1                                                         gggTTCTAATGTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTATTTTTTGCGTTCTGTCGGCATGACCGCTACAACAACCTCTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCGGGGAATATCCA                                                                                <  1:360070/131‑1                                                            TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCG                                                                             >  6:217811/1‑134                                                            TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGCGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCG                                                                             >  8:298901/1‑134                                                            TTCTAATCTACTCGTTTAAATACAATAGCTGAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCG                                                                             >  5:19599/1‑134                                                                 ATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCAT                                                                      >  6:263358/1‑136                                                                         GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGC                                                              <  7:149493/136‑1                                                                         GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGC                                                              >  1:189989/1‑136                                                                         GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGC                                                              >  2:102128/1‑136                                                                         GTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGC                                                              >  6:150232/1‑136                                                                                   AATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTT                                                    <  1:81336/136‑1                                                                                        CTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGGATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGG                                                 >  3:297559/1‑134                                                                                            GAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGAT                                            <  5:137092/135‑1                                                                                            GAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGAT                                            <  3:239260/135‑1                                                                                              GAACGAATGTCCTTATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGG                                         <  3:60419/136‑1                                                                                              GAACGAATGTCCTAATTTTTGCCTTATCTCTGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGG                                         <  4:20524/136‑1                                                                                              GAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGG                                         <  2:26408/136‑1                                                                                              GAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGG                                         <  3:170912/136‑1                                                                                              GAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTAGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGG                                         >  5:137011/1‑136                                                                                                ACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCG                                       >  3:212708/1‑136                                                                                                    ATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGAGCACTTGGGCAGATTGGCGTCAG                                   >  6:57959/1‑136                                                                                                       TCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTA                                 <  2:189989/135‑1                                                                                                       TCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTA                                 <  8:251711/135‑1                                                                                                       TCCTAATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCAGTGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTA                                 <  7:278570/135‑1                                                                                                            ATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGG                                         >  4:264167/1‑122                                                                                                            ATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGG                                         <  3:264167/122‑1                                                                                                            ATTTTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATCACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGG                           >  6:94465/1‑136                                                                                                               TTTGCCTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTG                         <  4:324950/135‑1                                                                                                                    CTTATCTCGGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTG                   >  3:228934/1‑136                                                                                                                         ccccGCATGCCCCCTACAACAACCAGTGGCGGGGGATGCCGCTGGATGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGCCCGTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCG              <  1:162985/132‑1                                                                                                                            GGCATGACCCCTACAACTACCTGTGGCGTGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCG              <  4:105880/133‑1                                                                                                                            GGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCG              <  1:111777/133‑1                                                                                                                            GGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCG              <  3:272167/133‑1                                                                                                                            GGCATGACCCCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCG              <  3:243958/133‑1                                                                                                                               cTGACCCCTACATCCACCAGTCGCGGGGTCTCCCGCTGGAGCGCACTCGCGCCGGGAATATCCAGCGCAGCCATCACCATGCCCGCGCACGTGGGCAGATTGGCGTCAGTAATCCGGTGAGGCTGTATCGGGCTGC        <  1:278744/135‑1                                                                                                                                     CCTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCGGGCTGCCTCCAG  >  2:185306/1‑136                                                                                                                                                                                                                                                                              ACCTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/3376472‑3376605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAACAACCTGTGGCGGGGTATGCCGCTGGAGGGCACTCGCGCCGGGAATATCCAGCGCAGCCATGACCTTGCCCGCGCACTTGGGCAGATTGGCGTCAGTAATCAGGTGAGGCTGTATCGGGCTGCCTCCAG  <  ACB143/5775229‑5775096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.