Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 3,626,089 | 0 | T | G | 40.0% | 23.9 / 10.7 | 35 | V174G (GTG→GGG) | hcf136_3 | Ycf48‑like protein |
Reads supporting (aligned to +/- strand): ref base T (11/10); new base G (0/14); total (11/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.97e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GGCAGCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGCCGGCGAGCAGGGC > ACB143/3625955‑3626219 | ggcagCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTGGGTGCCTACGGGGTgg > 2:139322/1‑137 (MQ=255) gcagCGGAGGCGGCCGCAGACGAGCGGCGCGTGGCGGGGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGc < 4:231505/137‑1 (MQ=255) gcagCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGc > 4:218453/1‑137 (MQ=255) cGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAT‑gc > 3:79513/1‑137 (MQ=255) cTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGACAT‑GCGCAcc > 3:27894/1‑137 (MQ=255) cAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCGACGGGGTGGCCAT‑GCGCACCgccgac > 4:108726/1‑137 (MQ=255) aGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAT‑GCGCACCGccgacg > 5:211038/1‑137 (MQ=255) gAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAT‑GCGCACCGACGAcggcgg > 7:241385/1‑137 (MQ=255) gctggtGGCCGACGGCGCGGACAAGCCGTTGTGGCCCCTCAATTTCACCGATCCCCCCACGGGCGTGGTCGGCGGTGCCTAGGGGGTGGCCAG‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGcc < 5:204660/137‑1 (MQ=255) ggctgGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGGGCCCAG‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGa < 8:191162/136‑1 (MQ=255) gccgccGGCGCGGACAAGCGGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGGCGGCGGGGCCTAGGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 8:138958/137‑1 (MQ=255) gCCGACGGCGCGGACAAGCGGTTGTGGGCCCTGAATTTCCCCGATGCCCGCACCGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAG‑GCGCCCCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 6:209532/137‑1 (MQ=255) gCCGACGGCGCGGACAAGCGGTTGTGGGCCCTGAATTCCACCGATGCCCGCACCGGCCGGGGCGTCGGTGCCTACGGGGGGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 4:23508/137‑1 (MQ=255) gCCGACGGCGCGGACAAGCCGTTGTGGGCCCTGATTTTCCCCGATCCCCGCACCGGCCGGGGCGGCGTGGCCTACGGGGTGGCCAG‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGcc < 7:173734/137‑1 (MQ=255) ggggcgcACACGCGGTTGTGGGCCCTGAATTACCCCGAGGCCCGCACGGGCGTGGGGGTGGGGGCCT‑CGGGGGGGGCATGGCCCCCCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACgg < 2:265477/134‑1 (MQ=255) ggCGCGGACAAGCCGTTGTTGGCCCTTAATTTCACCGATGCCCGCAACGGCCTGGGCGGCGGTGCCTCCGGGGGGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACgg < 5:155177/137‑1 (MQ=255) ggCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCACCGGCCTGGTGGGCGGGGCCTCCGGGGTGGCCAG‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACgg < 2:211020/137‑1 (MQ=255) ggcgGACATGCGGTTGTTGGCCCTGAATTCCCCCGAGCCCCCCACCGGCGTGGGCGGCGGGGCCGCGGGGGGGCCCAT‑GCCCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGc < 6:174519/136‑1 (MQ=255) ggAAAAGCCGTTGTTGGCCCTGAATTTCCCCCAGCCCCGCAACGGCCTGGGCGGCGGTGCCTACGGGGGGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTg < 8:7758/137‑1 (MQ=255) aCAAGCGGTTGTTGGCCTTCAATTTCCCCTCTCCCCGCAACGGCCTGGTCGGCGGTGCCTAGGGGGGGGCCTT‑GCGCCCGGAGGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGa < 1:268651/137‑1 (MQ=255) aCAAGCGGTTGTGGGCCCTGAATTTCACCGATCCCCGCACCGGCCTGGGCGGGGGTGCCTCGGGGGGGGCCAG‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGa < 3:218453/137‑1 (MQ=255) aCAAGCCTTTGTTGGCCCTGAATTGCACCCTTCCCCGCCAGGGCCGGGGCGGCGGTGCCTACGGGGGGCCCAG‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGa < 8:124135/137‑1 (MQ=255) aCAAGCCGTTGTTGGCCCTGAATTTCACCGAGGCCCGCACCGGCCTGGTGGTCGGTGCCTAGGGGGGGGCCTT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGa < 3:254597/137‑1 (MQ=255) aacgcggttgttGGCCCTTAATTTCCCCGATGCCGGCAAGGGCCGGGGCGTGGGGGCCTCCGGGGGGGCCTT‑GCGCAGCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGAc < 3:35833/131‑1 (MQ=255) aTTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGgcg > 3:22879/1‑137 (MQ=255) ggttGCCCGCAACGGCGGGGGCGTGGGTGCTTACGGGGGGGCCAT‑GCGCACCTACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAg < 4:141405/134‑1 (MQ=255) cccggCCCGCACCGGCCTGGGGGGCGGTGCCGCCGGGGTGGCCAT‑CCCCACCGAGGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAg < 6:169201/133‑1 (MQ=255) atcccccCAACGGCCGGGGCGGCGGGGCCTCCGGGGGGCCCAT‑CCGCCCCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGc < 3:26031/134‑1 (MQ=255) tccccGCACCGGCGGGGTCGTGGGTGCCTCGGGGGGGGCCAG‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCa < 1:112050/135‑1 (MQ=255) cccGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAT‑GCGCACCGCCGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAAc > 1:131034/1‑137 (MQ=255) aaCGGCCTGGTCGTCGGGGCCTACGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGgt < 8:241385/137‑1 (MQ=255) gggggtcgGGGCCTACGGGGTGGCCAT‑GCGCACCGAGGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCg < 7:146844/133‑1 (MQ=255) ggTCGTCGGTGCCTCCGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCg < 2:43729/137‑1 (MQ=255) aCGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGCCGGCGAGCAGGGc > 5:241215/1‑137 (MQ=255) aCGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGCCGGCGAGCAGGGc > 8:15094/1‑137 (MQ=255) | GGCAGCCGAGGCTGCCGCAGACGAGCGTCGCCTGGCGGCGGCGCAACGGCTGCTGGCCGACGGCGCGGACAAGCCGTTGTTGGCCCTGAATTTCACCGATGCCCGCAACGGCCTGGTCGTCGGTGCCTACGGGGTGGCCAT‑GCGCACCGACGACGGCGGGCGCAGCTGGCAGTCGGAGATCGGCCGACTGCCGAACGGGCGTGGACTGCACCTGTATGCCCTGGCGCGCCAAGGCAACCAGGTGTACATCGCCGGCGAGCAGGGC > ACB143/3625955‑3626219 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |