Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | ACB143 | 1,311,561 | Δ1 bp | 12.1% | coding (1926/1989 nt) | aaeB_2 → | p‑hydroxybenzoic acid efflux pump subunit AaeB |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 1,311,561 | 0 | G | . | 12.1% | 178.5 / 19.2 | 58 | coding (1926/1989 nt) | aaeB_2 | p‑hydroxybenzoic acid efflux pump subunit AaeB |
Reads supporting (aligned to +/- strand): ref base G (27/24); new base . (4/3); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.37e-01 |
CGTGGAGGCAGCGCTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGGCGCTGCTGCTCACCGGC > ACB143/1311426‑1311694 | cGTGGAGGCAGCGCTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTg < 2:107088/136‑1 (MQ=255) gAGGCAGCGCTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCCGCTGCTGGATGCTGCCAGTGAGCAGGTCATTGCGGCCTTGCGTCGGCGACCCCCCCGCGCCCCGCCTCGCCGGGCCGAGGGGGCCGTACGGCAAt > 6:245753/1‑136 (MQ=255) aGGCAGCGCTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAAtt > 1:138717/1‑136 (MQ=255) aGGCAGCGCTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCTGCGGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGCCCCGCTTCGCCGGGCCGAGGGGGCCGTACTGGaaat > 7:132379/1‑134 (MQ=255) aGGCAGCGCTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCGGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCATGCGTCGGCTACCCCCCACCGCCCCCCTGCGCCAGGGCGAGGGGGCAGTAAAGCaaat > 2:193046/1‑134 (MQ=255) cTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGaaaa < 3:284614/136‑1 (MQ=255) cTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGaaaa < 3:110294/136‑1 (MQ=255) aaaGGGCCTGCTGCCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTggg > 8:291782/1‑136 (MQ=255) aaaGGGCCTGCTGCCGGGCGTGGGCAGCAGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCGTAGCCTGGCCGTGGGGGCAGTACTGCAATTGCACAAAAGCTggg > 5:115109/1‑136 (MQ=255) gCCTGCTGGCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGGGCAGTTCATTGCGGCCATGCGTCGGCTACCCGCCCGCGACCCGCTTCGACTGTCCGACGGGGCAGTACAGGCAGTCCAGCAAACCTGGGGCaa > 8:78106/1‑135 (MQ=255) ctgcCGGGCGTGGGCAGCTGCTGGATGCTGCCATTGAGCAGTTCATTGCGGCCTTGCGGCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTg < 2:275653/136‑1 (MQ=255) ctgcCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTg > 4:349734/1‑136 (MQ=255) ctgcCGGGCGTGGGCAGCTGCTGGATGCAGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGCCCCGCGTCGCCTGGCCGAGGGGGCAGTACAGCAATTGCCGAAAAGCTGGGGCAAATGGTg > 3:307032/1‑136 (MQ=255) ggCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACT‑CAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTgg < 6:189938/136‑1 (MQ=255) tGGGCAGCGGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACT‑CAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCagg < 4:360909/136‑1 (MQ=255) gggCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCagg < 8:369911/136‑1 (MQ=255) gggCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGGCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCagg < 8:67572/136‑1 (MQ=255) ggCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTAGCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACT‑CAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCagga < 7:301064/135‑1 (MQ=255) ggCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCagga < 8:93376/136‑1 (MQ=255) ctgGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGCGGGGGCAGTACT‑CAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACAACCa > 2:181789/1‑136 (MQ=255) gctgcCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGt > 4:368809/1‑136 (MQ=255) ccAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGttt < 3:174964/134‑1 (MQ=255) cAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCg > 2:276504/1‑136 (MQ=255) aGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGt < 1:308720/136‑1 (MQ=255) gttaGCAGTTAATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTg < 4:21118/133‑1 (MQ=255) gTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGCAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTg > 8:167677/1‑136 (MQ=255) gTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGt > 3:242654/1‑135 (MQ=255) cAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTgg < 6:81930/136‑1 (MQ=255) ttGCGGCCTTGCGTCGGCTACCCGCCAGCGAGCCGCTTCGCCTGGCCGAGGGGGAAGTACTGCAATTGCAGAAAAGGTGGGGCAAATGTTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTgg < 4:343949/136‑1 (MQ=255) ttGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTgg < 1:97043/136‑1 (MQ=255) ttGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTgg < 5:83555/136‑1 (MQ=255) ttGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTgg < 5:371524/136‑1 (MQ=255) tGCGGCCTTGCGTCGGCTACGCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTTCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTgg < 7:131031/135‑1 (MQ=255) ggCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCgg > 6:103726/1‑136 (MQ=255) tGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGtgc > 2:243212/1‑136 (MQ=255) tGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGtgc > 6:162759/1‑136 (MQ=255) tGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGtgc > 6:327236/1‑136 (MQ=255) tGCGTCGGATACCCGCCAGCGCCCCGCTTCGCCTGGCAGAGGGGGCAGTACTGCAATTGCATAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGTCCACCCCTGGGTTTGAGTGAGTGGGAAGTTGGCGGTGtgc > 4:125676/1‑136 (MQ=255) cGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGtgct < 1:27268/135‑1 (MQ=255) cGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGtgct < 7:115176/135‑1 (MQ=255) gTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGtgctgc > 3:214312/1‑136 (MQ=255) gTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGtgctgc > 6:201564/1‑136 (MQ=255) tACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTg > 2:103355/1‑106 (MQ=255) tACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTg < 1:103355/106‑1 (MQ=255) cccGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCg < 5:295237/136‑1 (MQ=255) ccGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGt < 4:222174/136‑1 (MQ=255) gACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCtt > 6:393579/1‑136 (MQ=255) gACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCtt > 4:6182/1‑136 (MQ=255) gACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCtt < 1:193046/136‑1 (MQ=255) tCGCCTGGCCGAGGGGGCAGTACT‑CAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTGTTGCTTTATGtgttg > 8:148476/1‑136 (MQ=255) cGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGtgttg > 3:41074/1‑136 (MQ=255) cTGGCCGAGGGGGCAGTACTGCAATTGCAGAAACGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGttgttg < 4:342492/136‑1 (MQ=255) cTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGttgttg > 4:255889/1‑136 (MQ=255) ggCCGAGGGGGCAGTACT‑CAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGgcg > 7:299121/1‑136 (MQ=255) gCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGgcg < 2:301127/136‑1 (MQ=255) gAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGGCgctg > 3:283112/1‑136 (MQ=255) gggCAGTACT‑CAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGGCgctgctgct > 7:278797/1‑136 (MQ=255) aCTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGGCGCTGCTGCTCACCgg > 6:228225/1‑136 (MQ=255) cTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGGCGCTGCTGCTCACCGGc < 3:144628/136‑1 (MQ=255) | CGTGGAGGCAGCGCTGGCCAAAGGGCCTGCTGCCGGGCGTGGGCAGCTGCTGGATGCTGCCAGTGAGCAGTTCATTGCGGCCTTGCGTCGGCTACCCGCCAGCGACCCGCTTCGCCTGGCCGAGGGGGCAGTACTGCAATTGCAGAAAAGCTGGGGCAAATGGTGCCGCTGGCAGGAGGACACCCATGGGTTTGCGTGAGTGGGAAGTGGGCGGTGTGCTGCTCAGCCCGTTTTTGCTTTATGTGTTGTTGGCGCTGCTGCTCACCGGC > ACB143/1311426‑1311694 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |