| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | ACB143 | 690,144 | A→G | intergenic (+21/‑2438) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB143 | 690,144 | 0 | A | G | 88.2% | 15.4 / ‑1.9 | 18 | intergenic (+21/‑2438) | bauC/PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (15/0); total (18/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.22e-01 | |||||||||||
CGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGAGGCCGTCA‑GG‑CC‑TCCCCGC‑TTTG‑TTTTTGGGGGT‑TGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAG > ACB143/690023‑690211 | cGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGCGGCA‑gggcgcc > 3:114763/1‑132 (MQ=255) ggTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGTGGCCGTGA‑GC‑CC‑Gcgccgcc > 8:250686/1‑136 (MQ=255) ggTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCAAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGAATACCCTAGCCTGTAAGGGATGTAGATGAAGC‑GGAGAGGCCGTCA‑GG‑CC‑TCCCCGcg > 6:452860/1‑136 (MQ=255) gcTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGCGCCGGAC‑GG‑CC‑CCCCCCC‑TTTG‑tttt > 8:117142/1‑137 (MQ=255) aCCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGCGGGC‑GG‑CC‑GGCCCGCGTGTG‑TTTTTgggggg > 6:416778/1‑136 (MQ=255) gTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGCCGGGA‑GG‑CCGCCCCCCC‑TTTG‑TTTTTGGgggt‑gggt > 5:202670/1‑137 (MQ=255) gCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGCGTCA‑CG‑CC‑GCCCCGC‑GTTGTTTTTTGGGGGT‑GGgttgt > 6:95204/1‑137 (MQ=255) gCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGCCGCA‑GG‑CC‑CGCCCCC‑GTGG‑TTTTTGtgggt‑ggggtttt > 2:471824/1‑132 (MQ=255) gCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGCCCGA‑GG‑CC‑CACCCCC‑CCTG‑TTTTTTTGGGT‑GTgttgtt > 3:199295/1‑137 (MQ=255) gCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGCCGGGA‑GG‑CC‑GCCCCCC‑GGTT‑TTTTTTTGGGG‑TGgttgtt > 5:253028/1‑137 (MQ=255) gCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGCCGGCA‑GG‑CC‑GCCCCGCGGTTG‑TTTTTTTGggt‑gggtttt > 1:268070/1‑135 (MQ=255) aaGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGGGGGCCGGCG‑GC‑CC‑GCCCCGG‑GTGT‑TTTTTTGGGGG‑GGGtttttg > 7:59561/1‑137 (MQ=255) aaGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGAGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGTGGCGGAA‑CG‑CCATCCCCCG‑GTGG‑GTTTTGGTGTT‑TGGttgttg > 6:72910/1‑137 (MQ=255) gTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGCGGGGGGGGCCGGCG‑GGCCC‑ACCCCGG‑TGTT‑TTTTTGGGGTTGTGGGT‑TGGGTGTTGGggagggtt > 7:202668/1‑134 (MQ=255) gTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGCGGGA‑GG‑CC‑GCCCCGC‑GTTT‑TTTTTGGGGGT‑TGGTTGTTGGTGTTTGGGGGGGACtt > 2:45241/1‑136 (MQ=255) tGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGGGGGA‑GG‑CC‑GCCCCCCGGTGG‑TTTTTGGGGGT‑GGGGTTTGGGGGTTGGgggggactttt > 2:109724/1‑132 (MQ=255) tGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGGGGGCGGCAGGG‑CG‑CCCCCGG‑GTGG‑TTTTTGGGGG‑‑TGGGTGTTGGGGGTGGGGTGGGACGGtt > 2:342970/1‑137 (MQ=255) gCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGA‑GGGGAGGCCCTCC‑CG‑CC‑ACCCCCC‑CGTGTTTTTTTGGGGT‑GGGTTTTTG‑TGTTTGGGAGGTACAGTTTTgat > 8:369248/1‑136 (MQ=255) | CGGATGGTGTGCGCTTCTATACCCGTCGCAAGGCCATTACCCAGCGTTGGCCGCAGCGGGCCAGCCATGAAGCGTCGCAGTTTGCATTCCCTAGCCTGTAAGGGAAGTAGATGAAGC‑GGGGAGGCCGTCA‑GG‑CC‑TCCCCGC‑TTTG‑TTTTTGGGGGT‑TGGTTGTTGCTGTTGGGGAGGAACTGTTTTGAG > ACB143/690023‑690211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |