| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 2170755 = | 61 (1.290) | 8 (0.170) | 5/234 | NT | 14.5% | intergenic (‑770/‑67) | arsR1/CJ019_02060 | Arsenic resistance transcriptional regulatorArsR1/IS1182 family transposase ISPpu16 |
| ? | ACB143 | 2716447 = | 35 (0.760) | coding (185/846 nt) | rhaR_3 | HTH‑type transcriptional activator RhaR | |||||
TTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170839‑2170755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTCG > ACB143/2716447‑2716578 TTCGATGAATCGCTTCATGTTTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGTCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCTCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCG < 1:183675/136‑1 ACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCA > 7:139782/1‑136 ACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGACAGAAGCGCTGGGCGCCCGACTCGATCTCGGTGAATACATAGCCTTCGTGCA > 7:135625/1‑136 AGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGCCTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGC > 8:192137/1‑136 CAACGGCGGGGGTTTTCACACAGTCTGTACCGGTGCCAGGTGGTCGCTGCGGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGGACATGCGGGGCGAAGCGCTGCTGATAG < 4:27180/136‑1 CGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGC > 4:313425/1‑134 CGGGCGTTTTCACACAGTCTGGACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTAGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGC > 5:37644/1‑134 aACACAGTCTGGACCGGTGCCAGGTTCTATATTCAAAGGAGCCAGAAGCGCTGGGCGCCCGACGCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCA > 4:75455/2‑136 GACCGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGGTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTCG < 2:150558/136‑1 TTCGATGAATCGCTTCATGATTGTCCCCACGGTCACGACGACCAGAAGGTTAGACAACCGCGGGCGTTTTCACACAGTCTGGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ACB143/2170839‑2170755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccGGTGCCAGGTGCTCGCTGCCGCGGTGCCAGAAGCGCTGGGCGCCCGACTCGATCACGGTGAATACATAGCCTTCGTGCACATGCGGGGCGAAGCGCTGCTGATAGTAGCGAGCGTGCAGCATCTCGACGTCG > ACB143/2716447‑2716578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |