New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 2172434	101 (2.130)	40 (0.860)	26/238	NT	40.5%	intergenic (+176/+92)	CJ019_02060/CJ019_02061	IS1182 family transposase ISPpu16/hypothetical protein
	?	ACB143	5563630 =	18 (0.390)					coding (1047/1902 nt)	mutL_2	DNA mismatch repair protein MutL

AAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172301‑2172434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGG  >  ACB143/5563630‑5563752                                                                                                                                                                                                                                                                   AAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTA                                                                                                                           >  2:26114/1‑136  AGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTAC                                                                                                                          >  1:125134/1‑136           CACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGG                                                                                                                 >  3:170022/1‑136              ATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCTCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGC                                                                                                              >  8:256259/1‑136                      ATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCT                                                                                                      >  2:233048/1‑136                          GCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTC                                                                                                  <  7:237667/136‑1                          GCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTC                                                                                                  <  2:40131/136‑1                                         TTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATC                                                                                   >  7:240074/1‑136                                                  AACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                            <  1:48910/134‑1                                                  AACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                            <  1:55564/134‑1                                                  AACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                            <  5:152764/134‑1                                                     CACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCCTCCGGACGTACATCGGCCAAGGCACG                                                                       >  3:174001/1‑136                                                       CGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT                                                                     <  8:295560/136‑1                                                       CGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT                                                                     <  1:119229/136‑1                                                       CGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT                                                                     <  8:17778/136‑1                                                       CGCAATTTCTTGCCAGATTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGT                                                                     <  1:322766/136‑1                                                          AATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCA                                                                  <  8:222440/136‑1                                                               CTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGT                                                              <  4:72653/135‑1                                                                  GCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTG                                                             <  5:188325/133‑1                                                                     AGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC                                                       <  5:257817/136‑1                                                                                CCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATG                                            <  4:150256/136‑1                                                                                  TCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCA                                          >  8:237438/1‑136                                                                                        GATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGC                                    <  4:159166/136‑1                                                                                             CTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCT                               <  3:317302/136‑1                                                                                             CTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCT                               <  5:90014/136‑1                                                                                              TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                            >  5:104622/1‑90                                                                                              TGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAG                                                                            <  6:104622/90‑1                                                                                                 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGC                           >  7:55470/1‑136                                                                                                 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCA                                                                              >  3:221114/1‑85                                                                                                 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCA                                                                              <  4:221114/85‑1                                                                                                 GCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCAGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGTTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGC                           >  8:281449/1‑136                                                                                                         ACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTC                             <  1:174003/126‑1                                                                                                         ACGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTC                             >  2:174003/1‑126                                                                                                          CGCATTTCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTA                  <  7:136454/136‑1                                                                                                                TCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC                                                       >  8:131407/1‑93                                                                                                                TCGCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATAC                                                       <  7:131407/93‑1                                                                                                                  GCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGC          >  4:26517/1‑136                                                                                                                  GCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTACGCGGAACCGTACTTCATGC          >  5:304221/1‑136                                                                                                                  GCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGT                                                                                        <  2:276857/58‑1                                                                                                                  GCGTGTTTTCACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGT                                                                                        >  1:276857/1‑58                                                                                                                           CACACAGCCTGGTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGG  <  7:256259/135‑1                                                                                                                           CACACAGCCTGGGACGGCAGCAGGTGCGTCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGG  <  7:117189/135‑1                                                                                                                                                                                                                                                                   AAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172301‑2172434 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGGTTGG  >  ACB143/5563630‑5563752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.