New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	ACB143	= 2172438	100 (2.110)	5 (0.110)	5/232	NT	7.1%	intergenic (+180/+88)	CJ019_02060/CJ019_02061	IS1182 family transposase ISPpu16/hypothetical protein
	?	ACB143	= 2716441	35 (0.770)					coding (191/846 nt)	rhaR_3	HTH‑type transcriptional activator RhaR

CCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172327‑2172438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACGAACTGGAACTGGGCCGCC  <  ACB143/2716441‑2716307                                                                                                                                                                                                                                                         CCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCG                                                                                                                 <  3:178323/136‑1             gaaTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATA                                                                                                     <  4:190735/133‑1               TTTGAGCTAGACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACC                                                                                                   >  2:85966/1‑136                                     CTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCG                                                                             >  5:261198/1‑136                                                 GCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTAT                                                                  <  1:309424/135‑1                                                                                                             GTCGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACGAACTGGAACTGGGCC     <  1:109698/136‑1                                                                                                               CGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACG                    >  5:245070/1‑119                                                                                                               CGGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACG                    <  6:245070/119‑1                                                                                                                GGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATTAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGCGTGACCGGTGTGCTTGACGAACTGGAACTCGGCCGCC  >  4:25620/1‑136                                                                                                                GGCAGCATGGTGCTGAGCAACCCCGCCGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGCCGAACTGGAACTGGGCCGCC  >  8:194182/1‑136                                                                                                                                                                                                                                                         CCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  ACB143/2172327‑2172438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGCAGCATGGTGCTGATCAACCCCGACGAACTGCATACCGGCGCTACGGCCCATGAAGCCGGCTGGCGTTATCGCGGCTTCTATCCCGAGCACGAGCGGGTGACCGGTGTGCTTGACGAACTGGAACTGGGCCGCC  <  ACB143/2716441‑2716307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.