Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | ACB143 | 3,273,878 | 0 | C | A | 30.9% | 62.7 / 13.6 | 42 | D40E (GAC→GAA) | fabG_5 | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG |
Reads supporting (aligned to +/- strand): ref base C (15/14); new base A (0/13); total (15/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.15e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ATGGAGGCAGGCATGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGATATAGGTCCGA > ACB143/3273747‑3274005 | aTGGAGGCAGGCATGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAAc < 7:300823/136‑1 (MQ=255) aggctgtcATGTCAGAACAACAAAAAGTCGTGCTGGTGAGCGGGGCGTGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTTCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCa < 8:79984/136‑1 (MQ=255) aggcaggcATGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTg > 3:43303/1‑134 (MQ=255) caTGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCgctg > 4:300862/1‑136 (MQ=255) caTGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCgctg < 6:217195/136‑1 (MQ=255) aTGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCgctgc < 4:321372/136‑1 (MQ=255) taaGAACAACAAAAAGTCGGGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGAGAGATCGCCAA‑GCGTTTTTCGCTTTAGGGCTATATTTACTTATTAACAATTTTACATGCCTAAAAACTGCAGCCGctgctg < 2:154128/133‑1 (MQ=255) aacaaAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGTGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGaaa > 5:106523/1‑135 (MQ=255) acaaAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATa > 6:175590/1‑136 (MQ=255) aaaGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACAcg > 5:76490/1‑136 (MQ=255) cGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCt > 4:366921/1‑136 (MQ=255) cTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTggcg < 2:221015/136‑1 (MQ=255) tGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTggcgg > 3:99004/1‑136 (MQ=255) tGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTggcgg > 5:302402/1‑136 (MQ=255) tGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GAGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTAGCAAGGCCGACAAACTGCAGCCGATCCTGGAGGAAATACACGCCGATggcgg > 3:270890/1‑136 (MQ=255) cgggcgACGCCACGGGCGGCGAGAGCCACAA‑GGGTTTTGCGCGTGCGGGCTAAATTGCCTGCGTACCCCGGCGCCAGGCCGACAAACTCCCGCGGCGGCTGTAGCAAAACCACGCCGCTGGCGGCCAGGCCTACgg < 4:107476/136‑1 (MQ=255) cagtGGCGGCGAGAGCGCCAC‑GCGTTTTGCGCGTGCGGGCTATATTGCCTGCGTAACCGGGCGCCCGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGctct < 8:292809/133‑1 (MQ=255) cACTGGGGGCGAGAGCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATGGCCTGCTTAACCCGTCGCCCGGCCGACAAACTGCCGCCGCTGCGGGTGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGctct < 1:295573/136‑1 (MQ=255) cACGGGCGGCGAGAGCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCTTAACCCGGCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGctct < 7:92599/136‑1 (MQ=255) ggggggcgAGATCGCAAA‑GGGTTTTGCGCGTTTGGGCTATTTTGCCTGCGAAACCCGGCGCCAGGCCTAAAAACGGCCGCCGGTGGTGGAGTAAATCCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGAt < 3:208383/132‑1 (MQ=255) cggcgAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATgcg > 1:15457/1‑136 (MQ=255) ggctAGATCGCAAA‑GCGTTTTGCGCTTGAGGGCTATATTGCCTGCGAAACCCGCCGCCAGGCCTAAAAACTGCAGCCGCTGCTGTAGCAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATgcgc < 1:314836/136‑1 (MQ=255) ggcgATAGCGCCAA‑GCTTTTTGCGGGTGTGGGATATATGGCCTGCTAACCCCGCCGCCTGGCCGAAAAACTCCAGCCGCTGCGGGTGTAAAAACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATgcgc < 4:287109/136‑1 (MQ=255) ggtgtttCGCCAATGCGTTTTGGGCGGGTGGGATTTTTTGCCTGCTTACCCCGGCGCCCGCCCTAAAATCTGCGGCGGGTGGTGGAGTAAAACCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATgcgc < 4:353930/130‑1 (MQ=255) ttGCGGGTGTGGGATATATTGCCTGGGTAACCCGGCGCCAGGCCTACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTgg < 2:107633/135‑1 (MQ=255) gggcgTGTGGGCTATTTTGCCTGCGTACCCCGCCGCCCGGCCTACAAACTGCCGCGGCTGCTGGAGTAAATCCACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 1:170490/133‑1 (MQ=255) gcggGTGTGGGCTATTTTGCAGGCGAAACCCGGCGCCTGGCGTACAAATTGCGGCGGCGGGTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 7:169391/135‑1 (MQ=255) gcgcGTGTGGGATATATTGCCTGCGTAACCCGTCGCCTGGCCGAAAAACTCCAGCCGCTGGTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 3:252872/135‑1 (MQ=255) gcgcGTGAGGGCTTTATTGCCTGCTAACCCCGTCGCCTGGCCTAAAAACTGCCGCCGCTGGTGGTGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 5:68002/135‑1 (MQ=255) gcgcGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGAAAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 6:302402/135‑1 (MQ=255) gcgcGTGAGGGCAATATGGCCTGCGTAACCCGTCGCCAGGCCCAAAAACTCCACCCGCTGCTGGAGCAAAAACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGcc < 3:221146/135‑1 (MQ=255) cgcgTGAGGTATATTTTGCCTGCTAAACCGGTCGCCAGGCCTAAAAACTGCAGCCGCTGCTGGTGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCg < 7:337140/135‑1 (MQ=255) gTGAGGGCTATATTGCCTGCGAAACCCGGCGCCCGGCCGAAAAACTGCAGCCGCTGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACt < 7:17525/136‑1 (MQ=255) gTGAGGGATATATTGCCTGCGTAACCCGTCGCCCGGCCGAAAAACTGCAGCCGCTGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACt < 1:343851/136‑1 (MQ=255) tGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATc > 3:219310/1‑136 (MQ=255) ccTGCGTAACCCGTCGCCAGGCCTAAAAACTGCAGCCGCTGCTGGAGTAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGa < 8:46623/136‑1 (MQ=255) ccTGCGTAACCCGGCGCCAGGCCGACAAACTGCCGCCGCTGCTGGAGCAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGa < 1:48899/136‑1 (MQ=255) gCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCg > 1:309180/1‑136 (MQ=255) tAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGATCGTGa > 7:248586/1‑136 (MQ=255) accccGGCGCCCGCCCTACAAACTGCCGCCGCTGCGGGAGTAAAAACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGa < 3:366921/133‑1 (MQ=255) aCCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGata > 1:71102/1‑136 (MQ=255) cAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGATATAGGTCCGa > 6:241892/1‑136 (MQ=255) | ATGGAGGCAGGCATGTCAGAACAACAAAAAGTCGTGCTGGTGATCGGGGCGGGCGACGCCACTGGCGGCGAGATCGCCAA‑GCGTTTTGCGCGTGAGGGCTATATTGCCTGCGTAACCCGTCGCCAGGCCGACAAACTGCAGCCGCTGCTGGAGGAAATACACGCCGCTGGCGGCCAGGCCTACGGTTTTGGCTCTGATGCGCGCAAGGAAGAGGAGGTGGCCGAACTGGTAGAGACTATCGAGCGTGATATAGGTCCGA > ACB143/3273747‑3274005 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |