mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 135,427 | C→T | 100% | R134* (CGA→TGA) | SAS0118 → | putative exported protein |
| RA | BX571857 | 549,806 | A→G | 100% | intergenic (‑141/‑17) | SAS0478 ← / → SAS0479 | nucleoside permease/putative DNA‑binding protein |
| RA | BX571857 | 606,165 | A→G | 31.4% | N162S (AAT→AGT) | SAS0522 → | putative glycosyl transferase |
| RA | BX571857 | 621,623 | G→A | 100% | A42A (GCG→GCA) | SAS0539 → | putative uracil‑DNA glycosylase |
| RA | BX571857 | 868,946 | G→A | 22.3% | A315T (GCT→ACT) | SAS0786 → | putative selenocysteine lyase |
| RA | BX571857 | 1,025,623 | C→A | 5.4% | intergenic (+392/‑184) | SAS0954 → / → SAS0955 | amidase/putative protease |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,434,357 | C→G | 13.6% | A141G (GCT→GGT) | SAS1338 → | putative tetrahydrodipicolinate acetyltransferase |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 1,892,242 | T→A | 17.9% | Y4F (TAT→TTT) | SAS1743 ← | putative lantibiotic modifying enzyme |
| JC | BX571857 | 2,220,583 | 30 bp→30 bp | 18.7% | pseudogene (4082‑4111/5385 nt) | fmtB ← | putative surface anchored protein (pseudogene) |
| RA | BX571857 | 2,549,752 | C→T | 5.9% | T1241T (ACG→ACA) | SAS2383 ← | putative cell wall‑anchored protein |
| RA | BX571857 | 2,552,110 | T→C | 5.5% | E455E (GAA→GAG) | SAS2383 ← | putative cell wall‑anchored protein |
| RA | BX571857 | 2,602,946 | G→T | 100% | G116G (GGC→GGA) | SAS2426 ← | putative membrane protein |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 142 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 9 (0.090) | 9/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 132 (1.060) | 80/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||