mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BX571857 | 431,505 | T→C | 10.9% | S77P (TCA→CCA) | SAS0387 → | exotoxin |
| RA | BX571857 | 629,811 | G→T | 7.0% | intergenic (+506/‑81) | SAS0548 → / → SAS0549 | lipoate‑protein ligase A protein/mevalonate kinase |
| RA | BX571857 | 1,222,841 | T→A | 20.3% | I360N (ATT→AAT) | SAS1146 → | primosomal protein n' |
| RA | BX571857 | 1,252,438 | T→C | 100% | intergenic (+358/‑77) | SAS1171 → / → SAS1172 | signal recognition particle protein/30S ribosomal protein S16 |
| RA | BX571857 | 1,868,342 | G→A | 100% | G129D (GGT→GAT) | SAS1720 → | putative membrane protein |
| RA | BX571857 | 2,232,539 | G→A | 87.3% | noncoding (424/2923 nt) | unknown ← | |
| RA | BX571857 | 2,534,899 | A→G | 9.2% | G81G (GGT→GGC) | SAS2368 ← | putative exported protein |
| RA | BX571857 | 2,700,266 | A→G | 11.7% | S734S (AGT→AGC) | SAS2516 ← | fibrinogen and keratin‑10 binding surface anchored protein |
| RA | BX571858 | 20,628:1 | +G | 100% | coding (288/306 nt) | pSAS24 → | putative exported protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BX571858 | 20652 | 20652 | 1 | 248 [0] | [0] NA | pSAS24/– | putative exported protein/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BX571857 | 980997 = | NA (NA) | 18 (0.310) | 17/118 | NT | NA | noncoding (1/27 nt) | Repeat flanking prophage phiSa4(476) | Repeat flanking prophage phiSa4(476) |
| ? | BX571857 | = 1025750 | NA (NA) | intergenic (+519/‑57) | SAS0954/SAS0955 | amidase/putative protease | |||||
| * | ? | BX571858 | 1 = | 0 (0.000) | 219 (1.140) | 110/170 | NT | 100% | intergenic (–/‑11) | –/pSAS01 | –/putative ABC transporter ATP binding protein |
| ? | BX571858 | = 20651 | 0 (0.000) | intergenic (+5/–) | pSAS24/– | putative exported protein/– | |||||