New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 393941314 (0.160)10 (0.120) 6/288 11.4 42.3% noncoding (2350/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
?CP009273 = 3939429 NA (NA)noncoding (2366/2904 nt) rrlC 23S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

GGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA  >  CP009273/3939266‑3939421
                                                                                                                                                   |        
tgACCTGTGATCCGTGTTGCGGACAGGGTCGGGTGGGTATTTTGCCTGGGGCGGTCTCCTCCTAAAGAGTAACGGACGAGCACTAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCg         <  2:456901/148‑1 (MQ=11)
 gACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGCGCTGCAGCCGCATTGGCTAATCCTGGACGGACTTCGGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGa        <  2:987737/149‑1 (MQ=11)
  aCCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGGGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCgcg       >  2:475026/1‑147 (MQ=17)
   cccGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGc      <  1:24247/149‑1 (MQ=32)
   accgtatgccGGGTTGCTGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGc      <  2:343673/141‑1 (MQ=0)
    ccGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCg     >  1:783042/1‑149 (MQ=32)
    ccGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCg     >  1:896747/1‑149 (MQ=32)
    ccGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCg     >  2:862815/1‑149 (MQ=32)
     cGTGATCCGGGTTGCGGTCAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGt    <  2:201232/149‑1 (MQ=17)
     cGTGATCCGGGTTGCGGACAGTGTCTGTGGGGTAGTTTGACTGGGGCGGTCTTCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGt    <  2:660965/149‑1 (MQ=12)
      gTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGGTTGACTGCGAACGTg   >  1:445170/1‑149 (MQ=17)
      gTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTg   >  2:1103893/1‑149 (MQ=32)
      gTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAAAGGCATAAGCCAGCTTGACTGCGAGCGTg   >  1:363456/1‑149 (MQ=17)
       tGATCCGGGTTGCGGACAGTGACTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTGAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGGGCAGGGGCATAAGCCAGCTTGACTGCGAGCGTGa  <  2:51729/149‑1 (MQ=11)
                                                                                                                                                   |        
GGACCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA  >  CP009273/3939266‑3939421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.