| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 2,420,353 | A→G | intergenic (‑86/+135) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,420,353 | 0 | A | G | 98.0% | 631.5 / NA | 197 | intergenic (‑86/+135) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (106/87); minor base T (2/2); total (108/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
Only 100 of 197 total aligned reads displayed.
GCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGT > CP009273/2420209‑2420498 | gccgcAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCGCAACTGACAGTCTTTTTATAGGAAATATTTACAGGTTTGTTACACTTATAGTGCCATAAAAGTGACCATCAAGGCAGGatat > 2:425082/1‑149 (MQ=255) cgcAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATcc > 2:1056026/1‑149 (MQ=255) cGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATtt > 1:1155737‑M2/1‑147 (MQ=255) cAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATtttt > 2:160847‑M2/1‑145 (MQ=255) cAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATtttt > 1:368913‑M2/1‑145 (MQ=255) tGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCCGTTATATCCTAATCTCCTCCACTGCCAGTCTTTTTATAGGGAATGTGTGCAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGcccc < 2:240273/149‑1 (MQ=255) cTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTTTTTTTTTTTTCAACTGACAGGGTGGGTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATTAAATTTACCCTCAAGGCAAGGTCTCCCGCCCCggtg > 2:988355/1‑146 (MQ=255) gagaAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTTTTTTTTTTTTCAACTGACAGTCTTTTTATAGATAATATTTACAGGTTTGTTACACTTATCGTGCCCTATAATTGACCATCAAGGCAAGATATCTCGCCCCggcagcc > 2:844497/1‑143 (MQ=255) gagaAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGGCCATCAAGGCAAGATATCCCGCCCCGTTAGAc > 2:88134/1‑149 (MQ=255) gCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAGGATATCCCGCCCCGTTAGACGtattg > 2:8518/1‑148 (MQ=255) gCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGtatta > 1:1060120/1‑149 (MQ=255) gCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTGTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCCAGATATCCCGCCCCGTTAGACGtgtta > 1:1026573/1‑149 (MQ=255) cAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCGCGCCCCGTTAGACGTattatt > 1:856263/1‑149 (MQ=255) cAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTgttatt > 2:730553/1‑149 (MQ=255) cAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTattctt > 2:341417/1‑149 (MQ=255) cAGAACCACAGAGAGCGATAGCACCAGTTTTTTCAGAATGTCCTCACCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgt > 2:211048‑M2/1‑126 (MQ=255) aaCCGGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTAttttt < 2:442567/149‑1 (MQ=255) aaCCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTAttttt > 1:1220359/1‑149 (MQ=255) aCCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTc < 1:127499/149‑1 (MQ=255) ccAGAGAGAGCGTTAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCa < 2:197667/149‑1 (MQ=255) ccAGAGAGAGCGATAGCATCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCa < 1:144267/149‑1 (MQ=255) ccAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCa > 1:235564/1‑149 (MQ=255) agagagagCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCAtt > 1:734890/1‑149 (MQ=255) agagCGATAGCACCAGTTTTTTCATAATGTCTTAATTTGTCATTCTTTTTTTAGGTAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTaaaa < 1:538830/149‑1 (MQ=255) atcGATAGCACTAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGGGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAAt < 2:257436/147‑1 (MQ=255) aTAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCGGGAGATttttcgtcaaacgtacattgcgcagttgtgcgcttgcata < 1:1146071‑M2/149‑41 (MQ=255) aGCATCAGTCTTTTGATAATGTCCTAAAGTCACAGTCTTTTTATAGTGAATATTTACAGGTTTGTTACACTTATCGTGACATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGCCGTATTATTTTTCATTAAAAATGCTTaa < 1:340894/149‑1 (MQ=255) aGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATCTttttcgacaaacgtacattgcgtcttgatgcgtttgcatcat < 1:429590‑M2/149‑43 (MQ=255) cACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGt < 1:197769/149‑1 (MQ=255) cACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGt > 1:1187891/1‑149 (MQ=255) aCCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTa > 2:1029932/1‑149 (MQ=255) ccggTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATACTTAAGTAt < 2:970050/146‑1 (MQ=255) cAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataatacctt < 1:531339‑M2/149‑48 (MQ=255) aGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattccttt > 1:1076205‑M2/1‑101 (MQ=255) aGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGc < 1:684899/149‑1 (MQ=255) tttgCATAATGGCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCAttt < 2:298528/149‑1 (MQ=255) cATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATGCCGCCCCGTTAGACGTATTATATTTAAATAAAAATGCTTAAGTATGCATTTCAAt < 2:714947/149‑1 (MQ=255) aTAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATg < 1:408482/149‑1 (MQ=255) aaggtctgcAACGGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGca < 1:994922/141‑1 (MQ=255) aTGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGcac > 1:1124706/1‑149 (MQ=255) gTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAACATGCTTAAGTATGCATTTCAATGcacca > 2:1102373/1‑149 (MQ=255) gTCCTAAACTGACAGGCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatc > 1:254530‑M2/1‑87 (MQ=255) cTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGATTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGa > 1:491125/1‑149 (MQ=255) ctaCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATa < 1:381102/147‑1 (MQ=255) aaCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagcc < 1:779812‑M2/149‑69 (MQ=255) aCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGACAGt < 2:500041/149‑1 (MQ=255) tgttgtcttTTTATAGGGACTATTTACAGGTTTGTTACACTTAGCGTGCCATAAAATTGACCATCAAGGCAAGAGATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaacc > 1:515103‑M2/5‑77 (MQ=255) tCTTTTTATAGGGAATATTTACAGGTTTGTTCCACTTATCGTGCCATAAAATTGACCATCAAGGAATGAAAGTCCGCCGCGTTCCATGGAGTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACaaa < 1:600254/149‑1 (MQ=255) tCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttc < 1:1193980‑M2/149‑78 (MQ=255) tCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagtcc < 1:1116594‑M2/149‑78 (MQ=255) tCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCCCGATAGTGCACCaaa > 1:1174554/1‑149 (MQ=255) ttttgATATGAAATATTTACTGGTTTAATACACGTATCGCGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgaggcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgc > 1:588438‑M2/1‑70 (MQ=255) ttttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAATTATGCATTTCAATGCACCACGATAGTGCAACAAACCt > 1:61271/1‑149 (MQ=255) ttttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCt > 2:1023413/1‑149 (MQ=255) tttgATGGGGAAGATTTACGGGTTGGCTACAGTTAACGTGACATAAAATTGACCATCAAGGGAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgcc > 1:304566‑M2/1‑69 (MQ=255) tttACAGGGAATATTTACGTATTTGTTACACAAATCGTGCCAGAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgcct > 1:28983‑M2/1‑68 (MQ=255) ataGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCg > 1:449235/1‑149 (MQ=255) taGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtg < 1:403679‑M2/149‑86 (MQ=255) taGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattaatgcgtttgcataattcctttgccagaccgatatttgaaccaaccagttcgccttgtg < 1:484896‑M2/149‑86 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcttctttcttacattgcgtattgatgcgtttgcataattcctttgccagatcgatgtcgaagccaaccagttcgccttgtgaat < 2:720971‑M2/149‑89 (MQ=255) ggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCCCCACGATACTTCAACAGACCCGGCGTGCa > 2:604907/1‑149 (MQ=255) gAATATTTACATGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCAc < 1:89285/149‑1 (MQ=255) ttatCTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAGGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAACGCTTAAGTCTGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCa < 1:88334/148‑1 (MQ=255) tatTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCGGGCGTGCACCat > 1:271425/1‑149 (MQ=255) atTTACATGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaatttttt > 2:986276‑M2/1‑56 (MQ=255) tttACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatga < 1:1107892/149‑1 (MQ=255) cAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATgatgat < 1:173621/149‑1 (MQ=255) ggTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCa < 2:647960/149‑1 (MQ=255) gTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaa < 2:350517‑M2/149‑102 (MQ=255) tttGTTACACTTCTCGTGCTATAAAATTTACCACAAAGGACAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcttttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaat > 1:107305‑M2/1‑47 (MQ=255) tttGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCAtt < 1:1046503/149‑1 (MQ=255) ttGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTc < 2:1034391/149‑1 (MQ=255) tggTTACCTTTATCGTGCCATAAAATTGACCATCAAGGCAAGATGTCCCGCCCCTTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATATTGCAACAAACCTGGCGTGCACCATGATGATCATTc < 2:671781/147‑1 (MQ=255) ttACACTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCAt > 1:56559/1‑149 (MQ=255) acacTTATCGTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCa > 1:574680/1‑149 (MQ=255) gcTTATCGTGCCATAAAATTGACCATCAAGGTAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAgg > 2:826440/2‑149 (MQ=255) cTTATCGTGCCATAAAATTGACCATCAAGGCAAGATAGttttcgacaaacgtacattgcgtagtgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaatggcgcatag > 1:96810‑M2/1‑38 (MQ=255) ttATCGTGCCATAAAATTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaatggcgcatagg < 1:1007155‑M2/149‑113 (MQ=255) aTTGTTCCATAAAATTGACCATCAAGGCAATGTATatttcgacatacgtacattgcgtattgattcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaatggcgcataggtc > 1:472833‑M2/1‑35 (MQ=255) aTCGTGCCATAAAATTGACCATCAAGGCAAGATATttgtcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaatggcgcataggtc > 2:478045‑M2/1‑35 (MQ=255) cctcccAAAAAATTGACCAACAAAGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGc < 2:486552/145‑1 (MQ=255) gTGCCATAAAATTGACCATCAAGGCGAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGATTAAGTATGCATTTCAATGTACCACGATAGTGCAACAAACCTGGTGTGCACCATGAAGGTCATTCCATCAGGTACAGCt > 1:642683/1‑149 (MQ=255) gTGCCATAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCt > 1:448140/1‑149 (MQ=255) tGCCATAAGATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAACCCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCtt < 2:973506/149‑1 (MQ=255) aTAAAATTGACCATCAAGGCAAGATATtttaagacaaacgtacattgcgtaatgatgcgtttgcataattcatttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaatggcgcataggtcgggtcggt < 2:1071921‑M2/149‑123 (MQ=255) aTAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCa > 2:327130/1‑149 (MQ=255) tAAACTTGACCCTCAAAGCAAGAAATCCCGCCCCGCTAGGCGAATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTCCAGCTTCCCac > 2:945911/1‑148 (MQ=255) tAAAATTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAg > 2:57074/1‑149 (MQ=255) aaacTTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACACACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGc < 1:420946/149‑1 (MQ=255) aaaaTTGACCATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcatttgccagatcgatatcgaagccaaccagttcgccttgttgattttttgattcaaattgtgcataggtcgggtaggtaa < 2:788916‑M2/149‑125 (MQ=255) aaaaTTGACCATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGc > 1:67723/1‑149 (MQ=255) aaaTTGGCTATCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaatggcgcataggtcgggtcggtacc > 2:388126‑M2/1‑24 (MQ=255) agtGACCAGCAAGGCAAGATAGCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGAc < 2:130635/147‑1 (MQ=255) gACCATCAGGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTa > 1:902260/1‑149 (MQ=255) ccATCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTAACGCTTCCCCGCGACGTATc > 1:308357/1‑149 (MQ=255) aTCAAGGCAAGATATttttcgacaaacgtacattgcgtattgatgcgtttgcataattcctttgccagatcgatatcgaagccaaccagttcgccttgtgaattttttgattcaaatgacgcgtaggtcggggcggtaccgatggggat < 1:19300‑M2/149‑135 (MQ=255) aTCAAGGCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAg > 2:536805/1‑149 (MQ=255) ggCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCCTTCCATCAGGCACAGCTCCCCAGCGACGTATCAGTCAcc > 2:673367/1‑149 (MQ=255) ggCAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCAcc > 2:1126799/1‑149 (MQ=255) cAAGATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGt > 2:694087/1‑149 (MQ=255) | GCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGT > CP009273/2420209‑2420498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |