New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2096424	NA (NA)	38 (1.430)	32/276	NT	65.5%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	= 2427745	20 (0.750)					coding (476/660 nt)	dedA	DedA family inner membrane protein

TTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATAT  >  CP009273/2096294‑2096568                                                                                                                                   |                                                                                                                                                 ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAAt                                                                                                                                <  1:424861/149‑1 (MQ=40)        gTCTGTCGGCGCTTACTGCTCAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCTTCATGTTTGTCTCCAGATGCCAGACTGGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACaa                                                                                                                         <  1:110800/149‑1 (MQ=14)        gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACaa                                                                                                                         >  2:444691/1‑149 (MQ=255)        gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACaa                                                                                                                         <  2:296553/149‑1 (MQ=255)        gTCTGACGGAGCTTACTGCTGAATTGACTGCCCGCGAAGGTAAGTTGATGCCTCATGATGCACCCTGATCTATGGCTCCAGATGACAAACATCCTCTCCTATCAGGGCCTCGTTCGCACCTTCCTTAATCCCTAACAAAAATGAAACaa                                                                                                                         >  2:178646/1‑149 (MQ=14)                gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCa                                                                                                                 >  1:241936/1‑149 (MQ=255)                        tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACCATAAAATCAGAAAGcac                                                                                                         >  1:274709/1‑149 (MQ=255)                          ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAg                                                                                                       >  2:40098/1‑149 (MQ=255)                            gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCACTAACATAAATGACACAGTAAAATCAGAAAGCACAGGa                                                                                                     >  1:16757/1‑149 (MQ=255)                                              ggTGAGTTGGTGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACAGGATCGCATATCAGGGACTTGTGCGCACCTTCCTTGATCCCTAGCATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaataa                                                                                   <  1:436561/149‑1 (MQ=21)                                                tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATc                                                                                 >  2:180177/1‑149 (MQ=255)                                                 aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAatcatcc                                                                                >  2:463809/1‑148 (MQ=255)                                                  aGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACACTAAAATCAGAAAGCACAGGAAATTTTCTTACGAACTAATCAt                                                                               >  2:352498/1‑149 (MQ=255)                                                       atgaCTCCTGATGAACCCTGTTCGATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACCTAAATGACACAATAAAATCAGACAGCACAGGAAATTTTCTTACGGAATAATCATGTaaa                                                                          <  2:127405/149‑1 (MQ=255)                                                             cATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTc                                                                    >  2:7937/1‑149 (MQ=255)                                                               tgatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAACGAGGAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGc                                                                  >  1:107362/1‑149 (MQ=255)                                                                       catGTTCTTTGGCTGCAGATGACCAAATTGGTCTCATGTCAGGGACTTGTTCGCACCTTGCTTATTCCGTTGCATGAATGACACGATTGGATCAGAACGCACGGGAAATCTTCTTACGGGTTTATCATGTAAAGGTTGTGATTCAtttc                                                          <  2:175771/147‑1 (MQ=12)                                                                               aTGGCTCCAGATTACAAACATGATCTCCTATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAgg                                                  <  2:366616/149‑1 (MQ=255)                                                                                 ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACGCAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTGCGTCTCGGAACCGGCa                                                >  1:25130/1‑149 (MQ=255)                                                                                  gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCAt                                               >  1:46332/1‑149 (MQ=255)                                                                                            aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACCTAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTaa                                     >  1:214478/1‑149 (MQ=255)                                                                                              agaCATGATCTCAGATCAGGGACTTGTTCGCACCTTCCCTAACCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTaaaa                                   <  1:372388/147‑1 (MQ=255)                                                                                              aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTaaaa                                   >  2:422902/1‑149 (MQ=255)                                                                                                    gATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGTCATAATGTACTAAAAGCATaa                             >  1:162922/1‑149 (MQ=255)                                                                                                        tcATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCt                         >  2:255421/1‑149 (MQ=255)                                                                                                          atatCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTa                       >  1:378637/1‑149 (MQ=255)                                                                                                             tCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACtt                    >  1:36241/1‑149 (MQ=255)                                                                                                                 ggACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTAACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGa                <  2:37979/149‑1 (MQ=255)                                                                                                                       gTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATAtt          >  1:255137/1‑149 (MQ=255)                                                                                                                          cGCACCTTCCTCTGCCCCTGACATAAATGACACAATAAACTCAGAAAGCACAGGAAATTTTCTTACGGCATAATCATGTAAAGATTCCGCTTCATCTCGGAACAGGCCTAAGGTACTAAAAGCATCACGCTTACTTTCGACATATTTac       >  2:406150/1‑148 (MQ=255)                                                                                                                               cttccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAatatat  <  1:180177/149‑1 (MQ=255)                                                                                                                                   |                                                                                                                                                 TTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATAT  >  CP009273/2096294‑2096568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.