New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	1 (0.040)	11 (0.470)	11/244	NT	92.1%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	1 (0.040)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC  >  CP009273/1204914‑1205204                                                                                                                                                 |                                                                                                                                                   tAAATCAGGCAATTTATTTGTCGGATAAGCCTGTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                                >  2:144880‑M2/1‑145 (MQ=255)         gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCACCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                                        <  1:207574‑M2/149‑13 (MQ=255)                              ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt                                                                                                                   <  2:209741‑M2/149‑34 (MQ=255)                                            gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc                                                                                                     <  1:153869‑M2/149‑48 (MQ=255)                                            gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCAGTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtttcctagagccgtttgcacagtgccatc                                                                                                     >  1:260933‑M2/1‑102 (MQ=255)                                                          agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACAAACAGGTAATGCAGGAccttctcccaagccaaggttttcgagagccgtttgcacagtgccatccgatttgataacgc                                                                                       <  2:283183‑M2/149‑62 (MQ=255)                                                                      aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                           <  2:207574/149‑1 (MQ=255)                                                                                    gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagc                                                             <  1:165511‑M2/149‑88 (MQ=255)                                                                                     ccagccTGTTGGCGGAGTGGCTGAAGGCCACGACACCGGGACACCAACAGGTGATGCAGGGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                            >  2:258360‑M2/1‑61 (MQ=255)                                                                                                     gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                            >  2:249721‑M2/1‑45 (MQ=255)                                                                                                       ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                          >  2:363930‑M2/1‑43 (MQ=255)                                                                                                                 cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatgcttgcggcttaacagcagcgcgcgcagtgcggtaagtagcgggta                                <  1:381289‑M2/149‑117 (MQ=255)                                                                                                                               acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgagttgatatcgccaaacggattcattcggcttaaaagcagcgcgcgaagtgcggcaagcaactggtcgtgccgccactcct                  <  2:313302‑M2/149‑131 (MQ=255)                                                                                                                                            gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaccggattcttgcggcttaccagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctacaggcaagcccg     <  2:268261‑M2/149‑144 (MQ=255)                                                                                                                                               gagccttctcccaaaccaaggttttcgaaagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccgggctggcaccgga  <  1:305143‑M2/149‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC  >  CP009273/1204914‑1205204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.