New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1046001	65 (1.060)	64 (1.040)	48/296	0.3	64.0%	intergenic (+15/+418)	insB1/cspH	IS1 transposase B/stress protein, member of the CspA‑family
	?	CP009273	1973115 =	7 (0.110)					intergenic (‑661/‑119)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045856‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGT  >  CP009273/1973115‑1973256                                                                                                                                                                                                                                                                                                  TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGGCATTACCTTA                                                                                                                                             >  1:86200/1‑149  TGAGCGGTATAACCTGAATCTGAAACAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGCCAAAGTCATCGGGCATTATCTGAACATAAAACACCAACAATAAGTTGGAGCCATTACCTTAa                                                                                                                                            >  2:511155/1‑148     GCGGTAGAACCTGAACCTGAGGCAGCACCTGGCACGGCGGGGACGGAAGTCGCTGTCGTACTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGTCATTATCTGAACATAAAACACGATCAATAAGTTGGAGTCATTACCTTATCTT                                                                                                                                         <  1:523968/149‑1           TAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAA                                                                                                                                   >  2:375761/1‑149           TAACCTGAAGCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAA                                                                                                                                   <  2:431367/149‑1               aTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGATAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGCAGTCATTACCTTATCTTTACTAATAAT                                                                                                                               >  1:697558/2‑149               CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCCATAAATTGGAGTCATTACCTTATTTTTACTAATAAT                                                                                                                               >  2:721203/1‑149               CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAAT                                                                                                                               <  2:751506/149‑1                 GAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATGAGTTGGAGTCATTACCTTCTCTTTAGTAATAATCA                                                                                                                             >  1:916770/1‑149                   atcgtAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGA                                                                                                                           <  2:842149/144‑1                    TCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGAC                                                                                                                          >  1:172045/1‑149                    TCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGAC                                                                                                                          >  1:659191/1‑149                    TCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGAC                                                                                                                          >  1:184487/1‑149                    TCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGAGCATTATCTGAACATAAAACCCTATCAATAAGTTGGAGTCACTACCTTATCGTCACTAATAAACACAC                                                                                                                          >  1:210792/1‑149                     CTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACT                                                                                                                         >  1:654477/1‑149                               ACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGACTCATTACCTTATCTTTACTAATAATCAGACTAATATTTAac                                                                                                               >  2:592781/1‑147                                  TGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTCCCTGT                                                                                                            >  1:71197/1‑149                                      ACGGCTGGGACGGAAGCTGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATTTGAACATAAAACACTATCAATAAGTTGGAGGCATTACCTTATCTTTACGAATAATCAGACTAATATTTACCTGTTTGA                                                                                                        <  2:170023/149‑1                                           TGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAG                                                                                                   >  2:947870/1‑149                                           TGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATAAGACTAATATTTACCTGTTTGACCtaa                                                                                                   >  1:183318/1‑146                                                CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGG                                                                                              >  2:523308/1‑149                                                   AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGCTGGCATc                                                                                           >  2:149862/1‑148                                                      TCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGATCGAGTTGGGGTTGCG                                                                                        >  2:199792/1‑149                                                        GCTGTCGTTCTGAAAATCGGAGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACAGAAACCACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTg                                                                                      >  2:416243/1‑148                                                         CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACACAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACATTATCTTTACTAATAACCAGACTAATATTTACCTGTTTGACTGAGTTGGGATGGCGTag                                                                                     >  2:328472/1‑147                                                         CTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGGTGGGATTGCATCG                                                                                     >  2:245716/1‑149                                                          cGTCGTTCTCAAAAACAGTAGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTCTGACCGAGTTGGGATTGCATCGT                                                                                    <  2:916770/148‑1                                                            TCGTTCTCAAGAGTGGTGGAGCTGGATGACAAAGTCATCGGGCAGTATCTGAACGTACAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTT                                                                                  <  2:158012/149‑1                                                               TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTC                                                                               <  2:373709/149‑1                                                                  TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGCGTTGGGATTGCGTCGTTTCTCAAT                                                                            >  1:422346/1‑149                                                                  TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                            >  1:132570/1‑149                                                                   CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGAGTCGTTTCTCCGTT                                                                           >  1:516278/1‑149                                                                     gAATCGGTGGAGCTGCGTGACAAGGGCGTCGGGCATTATCTGAACATAGAACACTATCAATAAGTTGGAGTCATTACCTTATCTGTACTAATAATCAGACTAATATGTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAG                                                                         <  2:871559/148‑1                                                                     AAACCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAG                                                                         <  1:370247/149‑1                                                                                  TGCATGACAAAGTCATCGAGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTA                                                            <  1:827439/149‑1                                                                                    CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGCGTTGGGATTGCGTCGTTTCTCCATTAGGCGTAAAGCTTTAAT                                                          >  2:43172/1‑149                                                                                    CATCACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAAT                                                          <  2:237612/149‑1                                                                                        ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGCCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGCTGGGATTGCGTCGTTTCTCCATTAGCAGTGAAGCATTAATTTCA                                                      >  1:215907/1‑149                                                                                         CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCAC                                                     >  1:682444/1‑149                                                                                            AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAGGCTTTAATGTCACCTG                                                  >  2:956399/1‑149                                                                                            AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATATTTACTAATAATCAGACAAATATTTACCTGTTTGACCGAGTAGGGATATAGTCGTTTATACAGTTGGAGTAAGGTTTTGATGTCACCTG                                                  >  2:447539/1‑149                                                                                              TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAA                                                <  2:729837/149‑1                                                                                               CATCGGGCATTATCTGAACATAAACCAATGCCAATTGCGTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTGCATTAGGAGTAAAGCTTTCATGTCACCTGAAG                                               <  2:210792/149‑1                                                                                               CATCAGGAATTATCTGAACATAAAAAACTATCAATAAGTTGGAGTCATTACATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACTGAGTTGGGATTGCGTCGTTTCTCCATTAAGCGTAAACCTTTAATGTAACCTGAAG                                               >  2:330576/1‑149                                                                                                 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTT                                             <  1:556697/149‑1                                                                                                 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTATACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTCATGTCACCTGACGTT                                             >  2:649804/1‑149                                                                                                   GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCA                                           >  2:532777/1‑149                                                                                                        TTATCTGAACATAAAACACTATCAAGAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGTATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAA                                      <  2:165506/149‑1                                                                                                           TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAA                                   <  1:909943/149‑1                                                                                                           TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAA                                   <  1:32256/149‑1                                                                                                           TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAA                                   <  2:184487/149‑1                                                                                                           TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGGAAAGCTTTAATGTCACCTGAAGTTCACAGAATAA                                   >  1:812149/1‑149                                                                                                            CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAG                                  <  1:947870/149‑1                                                                                                                  ATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAG                            >  2:768738/1‑149                                                                                                                         acgATCAAGAAGTTGGAGTCGTTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGGCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGA                     <  2:48875/146‑1                                                                                                                          CTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAG                    <  2:697558/149‑1                                                                                                                           TATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGCACAGGTTATGAGC                   >  2:780285/1‑149                                                                                                                               AATAAGTTGGAGTCATTACCTTATCTTTACTAATGATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTGTAATGTCACCTGAAGTTCACAGAATAAGGAACATGTTATGAGATATA               >  2:711469/1‑149                                                                                                                               AATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTGTGCTGAAGTTCATAGGATAAGGAACAGGTTATGAGCTATA               >  1:276244/1‑149                                                                                                                               AATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATA               >  1:834408/1‑149                                                                                                                                     TTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTGACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATA         >  1:383871/1‑149                                                                                                                                       GGAGGCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCGTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATT       <  2:654477/149‑1                                                                                                                                        GAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTt      <  2:734231/149‑2                                                                                                                                            CATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGAAGTAAAGCTTTATTGTCACCTGAAGTTCACAGAATAAGGAACAGGTTCTGAGCTATAGCAATATTCTTGT  >  1:827718/1‑149                                                                                                                                                                                                                                                                                                  TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045856‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGT  >  CP009273/1973115‑1973256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.