New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1203261	3 (0.090)	18 (0.590)	13/238	NT	90.8%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	= 1205058	1 (0.030)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

GTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  CP009273/1204913‑1205196                                                                                                                                                  |                                                                                                                                           gTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCGTTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCCCCGGAACAGGGACACCAACAGGTAATTCAGAGcct                                                                                                                                         <  2:170533‑M2/149‑4 (MQ=255)      tCAGGCAATTTATTTGGCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                          >  1:353387‑M2/1‑141 (MQ=255)      tCAGGCAATTTATCTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc                                                                                                                                    <  2:435052‑M2/149‑9 (MQ=255)         ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGGAAAAGCGGCACCATTACATTTCAGCCAGCCTGTTGGCGGGGTGGCGGAAGGCCCCGGAACCGGGGCCCCCACAGGTGATTCCGCGccttctcccaa                                                                                                                                 <  2:291011‑M2/149‑12 (MQ=255)         ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaa                                                                                                                                 <  2:79886‑M2/149‑12 (MQ=255)              tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa                                                                                                                            >  2:7299‑M2/1‑133 (MQ=255)               ttattgGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAAAGGGGCTTCAACAGGTAATGCAGAGccttctcccaaaccaag                                                                                                                           >  2:310639‑M2/1‑132 (MQ=255)                   ttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGACGACCATTGTACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttt                                                                                                                       <  2:279162‑M2/149‑22 (MQ=255)                                 tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGAACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacaaaggtgttctcgagc                                                                                                               <  1:143448‑M2/143‑30 (MQ=255)                                       aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt                                                                                                   >  2:509388‑M2/1‑108 (MQ=255)                                         ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgca                                                                                                       >  1:291308‑M2/1‑106 (MQ=255)                                             gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagggcagtttgcacatt                                                                                                   >  1:273974‑M2/1‑102 (MQ=255)                                                      tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga                                                                                          <  1:419300‑M2/143‑51 (MQ=255)                                                      tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccggttgcacagtgccatccga                                                                                          <  1:252106‑M2/143‑51 (MQ=255)                                                      tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccgaaacaaggttttcgcgcgccggttgcacagtgccatgcga                                                                                          <  1:225765‑M2/143‑51 (MQ=255)                                                                       aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAATCCTGCCTTTACCAggg                                                                   >  2:255014/1‑149 (MQ=255)                                                                          aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGGGgcttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggat                                                                      <  1:281619‑M2/143‑71 (MQ=255)                                                                                    agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccgaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacag                                                      <  2:458261‑M2/149‑87 (MQ=255)                                                                                    agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacag                                                      <  2:596226‑M2/149‑87 (MQ=255)                                                                                       cagccTGTTGGCGGAGTGCCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcag                                                   >  2:447565‑M2/1‑60 (MQ=255)                                                                                                      gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccctccgatttgatatcgccaaacggattcttgcggcctaaccgcagcgcgcgaag                                          <  1:38631‑M2/143‑99 (MQ=255)                                                                                                      gTGGCTGAAGGCCACAGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                    >  2:230419‑M2/1‑45 (MQ=255)                                                                                                       tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagt                                         <  1:56304‑M2/143‑100 (MQ=255)                                                                                                                     ggAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccttttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                           >  1:380605‑M2/1‑30 (MQ=255)                                                                                                                          ccggacACCCAGCGGTAATGCAGAGccttcgcccaaaccgacgttttcgagagtcgtttgtacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcccgatgtgcagtaagtaactggtcat                      >  1:480990‑M2/3‑25 (MQ=255)                                                                                                                           gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtgcgtaacgagtcgtg                     <  1:168393‑M2/143‑120 (MQ=255)                                                                                                                                         tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtacgtaactggtcgtgccgccccttctcca       <  1:160265‑M2/143‑134 (MQ=255)                                                                                                                                              cAGACccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg  >  1:88331‑M2/1‑5 (MQ=255)                                                                                                                                                  |                                                                                                                                           GTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  CP009273/1204913‑1205196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.