New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 3312298 = | 61 (1.110) | 5 (0.090) | 5/284 | 6.4 | 8.0% | coding (303/1344 nt) | argG | argininosuccinate synthetase |
? | CP009273 | 3312323 = | 56 (1.050) | coding (328/1344 nt) | argG | argininosuccinate synthetase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGA > CP009273/3312154‑3312444 | tgatgCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACacga < 1:427777/149‑1 (MQ=255) gatgCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAac < 2:850632/144‑1 (MQ=255) atgCGATCCCTCTGCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAaca < 2:209015/144‑1 (MQ=255) atgCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCGCTTCAGTGCGGCGCATTTCATAACACCACCGGCGGCCTGACCTGTTTCAaca > 2:370638/1‑144 (MQ=255) tgCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAAAACGCACGTCTGATCGACTGCCGCACACAAGTGGTCGCCGAAGGTATTGCCGCTATCCAGTTGGGCGCGTTTCATAACACCACCGGCGGCCTGACCTATTTCAacac > 2:214388/1‑144 (MQ=255) aTCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCt < 1:37929/149‑1 (MQ=255) cTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGc < 1:65829/149‑1 (MQ=255) cTCGTCGTGCCATGGAATACGGCGCGGAGAACGAACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTGAACACGACGCCGCTGGGc > 1:595067/1‑149 (MQ=255) cTCGTCGGGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGc < 1:248125/149‑1 (MQ=255) tcgtcgTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTCGGcc > 1:884280/1‑149 (MQ=255) tGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACAGGACGCCGCTGGGCCGCGCCGTGGCt > 1:661219/1‑149 (MQ=255) gAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTgg > 1:502080/1‑149 (MQ=255) aTACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTa < 1:558015/149‑1 (MQ=255) gaACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGCCCCATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTtg < 1:690972/149‑1 (MQ=255) aCGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTgg < 2:807953/144‑1 (MQ=255) aCGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTgg < 2:807964/144‑1 (MQ=255) cACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGGCTGGTTCCTTGCTGGTTGCTGCg > 1:301807/1‑149 (MQ=255) tCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAaagaa < 1:699054/149‑1 (MQ=255) cGACTGCCGCAAACAACTGGGGGCCGAAGTTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGaa < 2:162313/144‑1 (MQ=255) cTGCCGCAAACAACTGGTGGCCGAATGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCTGTGACTGGTACCATGCTGGTTGCTTCGATGAAAGAAGATg < 1:683008/149‑1 (MQ=255) ccGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCGTTTCATAACACCACCGGCGGCCTGACCTATTTCAACCCGACGGCGCTGGGCCGCGCCGTGGCGGGTACCATGCTGGTTGCGGCGATGAAagaaga > 2:75001/1‑144 (MQ=255) cAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGGGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATgg > 2:355302/1‑144 (MQ=255) acaacTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCgg > 2:356544/1‑143 (MQ=255) ccacTGGTGGCCGAAGGTATTGCCGCCATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGGCCGTTTTCAGCACTACGCCGCTTGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAatat < 1:729712/147‑1 (MQ=255) tggtggCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGATGGTTGCTGCGAGTGAAGAAGATGGCGTGAata > 2:815561/1‑144 (MQ=255) gCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACCCGACGCCGCGGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGCTGGCGTGATTATCTGGGGTgg > 1:830391/1‑148 (MQ=255) gCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACGGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTgg < 2:833802/144‑1 (MQ=255) cGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGGGAATATCTGGGGTGGCg > 1:333788/1‑149 (MQ=255) gAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACgg < 1:651544/149‑1 (MQ=255) gAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCGGACCTATTTCAACACGAAGCCGATGGGCCGCGCCGGGACTGGTCCCATGCTGGTCGCTGCGATGAAAGAAGATGGCGTCAATAACTgggga > 2:324659/1‑143 (MQ=255) gAAGGTATTGCCGCTATTCAGTGTGGAGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCGGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGt > 2:291451/1‑144 (MQ=255) agtGCCGCTTTTCCGTGTGGCGCATTTGCTAACTCCTCCGGCGGCCTGACGTATTTCGCCACGACGCCGCTGGGTCGTGCCGTGTCTGGTTACATGCTGGTTGCTGCGATGGAAGAAGATGGCGTGAATATCTGGGGTGACGGt < 2:446861/142‑1 (MQ=255) aTTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCAc < 1:698394/149‑1 (MQ=255) atccAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGATGGTTGTTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTAc < 2:547971/141‑1 (MQ=255) cagcttgGCGCATTGCATACCACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACaaa < 2:137523/139‑1 (MQ=255) cAGTGTGGCGCCTTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACaaa < 2:117022/144‑1 (MQ=255) cAGTGTGGCGCATTTCATACCACCACCGGCGGCCTGACCTATTTCAACCCGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACaaa < 2:559941/144‑1 (MQ=255) ggCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGTTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGTTGACGGTAGCACCTACAAAGGAAACGatat > 1:33207/1‑149 (MQ=255) gcgcATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATc > 1:881566/1‑149 (MQ=255) cATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATTTCTGGGGTGACGGTAGCGCCTGCAAAGGAAACGATATCGag > 1:2558/1‑148 (MQ=255) cATTTCATAACACCACCGGCGGCCTGACCCAATTCAACACGGCGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGaa < 1:863192/149‑1 (MQ=255) cATTGCACAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTCCCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGata < 2:350727/144‑1 (MQ=255) tttCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATc > 2:847795/1‑144 (MQ=255) cATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGttt > 1:894690/1‑149 (MQ=255) cATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCGGCAAAGGAAACGATATCGGACgcta > 1:25664/1‑146 (MQ=255) tAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAGAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACg > 2:630916/1‑144 (MQ=255) aaCACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTa < 1:234835/149‑1 (MQ=255) acacCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTGCAAAGGAAACGATATCGAACCTTGCTAt > 1:334599/1‑149 (MQ=255) caccGGCGGTCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGtt > 1:878972/1‑149 (MQ=255) caccGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGtt < 1:498159/149‑1 (MQ=255) cggcggCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATg < 1:437606/149‑1 (MQ=255) cggcggCATGAACTATTTCGACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAACCGATATCGAACGTTTGTAtag > 2:308248/1‑142 (MQ=255) cTGACCTTCTTCAAACGGACGCGTCTGGGCCGCGCCGGTACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATACCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTagcaaaacgtt < 2:8343/144‑11 (MQ=255) tGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGGTGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTGTGGTctgctg > 1:460632/1‑149 (MQ=255) cTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGAGATCGAACGTTTCTATCGTTATGGTctgct > 2:62329/1‑144 (MQ=255) cTATTACAACACGACGCCGCTGGGCCGCGCCGTGACTGGTCCCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGGGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTctgct > 2:152065/1‑144 (MQ=255) tttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCGATg > 1:114142/1‑149 (MQ=255) tttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGAGAGGGACCGGTTCTATCGTTAGGGGCTGCAGAc > 2:704771/1‑144 (MQ=255) ttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTCTCGTTATGGTCTGCTGAcc > 2:55964/1‑144 (MQ=255) ttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCAGGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGAcc < 2:494274/144‑1 (MQ=255) aaCACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGACCGTTTCTATCGTTATGGTCTGCTGACCAATGCTGa > 1:504845/1‑149 (MQ=255) | TGATGCGATCCCTCGTCGTGCCATGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGA > CP009273/3312154‑3312444 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |