| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1046001 | 114 (0.970) | 134 (1.140) | 92/292 | 0.1 | 69.1% | intergenic (+15/+418) | insB1/cspH | IS1 transposase B/stress protein, member of the CspA‑family |
| ? | CP009273 | 1973115 = | 6 (0.050) | intergenic (‑661/‑119) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein | |||||
Only 100 of 248 total aligned reads displayed.
TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTGG > CP009273/1045856‑1046149 | ttGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCtta > 2:1694738‑M1/1‑146 (MQ=255) aGCGGGATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGCACATCAAACCCTATCAATAAGTTGGAGTCATTACCt < 1:444083‑M1/144‑2 (MQ=255) aaCCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCCTTACCttatctttactact > 2:1903480‑M1/1‑135 (MQ=255) ccTGAATCTGCGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTGCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACCCTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt < 2:632344/149‑1 (MQ=255) ccTGAATCTGAGGCAGCACCTTGCACGGCTGGGACGGAAGTCGCTGGCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt < 2:524366/149‑1 (MQ=255) ccgaaTCGTAGGCAGCACCTGGCACGGCTGGGACGGAAGTTCCTGTCGTCCTCATAATCGGTGTAGCTGCATGACAAAGTTATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttacta < 1:418963‑M1/142‑13 (MQ=255) cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttacta > 1:224459‑M1/1‑132 (MQ=255) cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTg > 2:1792280/1‑149 (MQ=40) cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCACCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttacta > 1:1606383‑M1/1‑132 (MQ=255) tGAATCTGAGGCAGCACCTGGCACGCCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTga < 2:1206869/149‑1 (MQ=255) gAATCGGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatca < 2:215954‑M1/149‑20 (MQ=255) aaTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCt > 1:1744681/1‑144 (MQ=38) aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTCAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCtt < 1:1675923/144‑1 (MQ=255) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTg > 1:1439475/1‑144 (MQ=40) tCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTACCACAAAGTTGGGGTCATTACCttatctttactaataatcagac > 2:549188‑M1/1‑127 (MQ=255) cTGAGGCAGCACCTGGCACGGCTGGGACGGTAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTCAACATAAAACACTATCAATAAGTTGGAGTCATNACCNANAATACGTACGCTTGCGATCa > 2:1030332/1‑149 (MQ=255) cTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCa < 2:338684/149‑1 (MQ=255) gAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcag > 1:245287‑M1/1‑124 (MQ=255) gcagcaCCTGGCACGGCTGGGCCGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt < 2:402225/149‑1 (MQ=255) gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagact > 1:1525465‑M1/1‑121 (MQ=255) cagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatt > 2:699578‑M1/1‑120 (MQ=255) agcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatattt > 2:1780697‑M1/1‑119 (MQ=255) gcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGa > 1:1845638/1‑144 (MQ=255) aCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATGAGTTGGGGTCATTACCttatctttactaataatcagactaatagttacc > 2:539551‑M1/1‑116 (MQ=255) cTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACt > 2:1193929/1‑149 (MQ=255) aCGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGCGGATCGGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAg < 2:1037844/149‑1 (MQ=255) cTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTCGTGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtata > 2:1938926/1‑149 (MQ=255) tGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTACATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatcattactaataatcagactaatatttacctgtttga > 1:928153‑M1/1‑104 (MQ=255) tGGGACGGAAGGCGCTGTCGTTCTCAAAATCGGTGGAGCTACATGACAAAGTCGTCGGGCGTTATCTGAACATAAAACACGATCAATGAGTTGGGGTCATTACCttatctttactaataatcagactaatctttaccggtttga > 1:600662‑M1/1‑104 (MQ=255) ggACGGAAGTCGCTATCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagtt < 2:1878935‑M1/149‑48 (MQ=255) aCGGAAGTCACTGTCGTACCCAAAATCGGTGGCGCTGCATGACGAAGTCATAGGGCATTATCTGTACATAAAACACTATCAATAAGTTGGAGACATTACAAACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtata > 1:738985/1‑144 (MQ=18) aGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgt < 2:1384470/149‑1 (MQ=255) cGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgt > 2:1505842‑M1/1‑92 (MQ=255) cGCTGTCGTTCGCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgt < 2:395268‑M1/149‑58 (MQ=255) tGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgc > 1:1375482‑M1/1‑89 (MQ=255) tCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgttt > 2:1124930‑M1/1‑87 (MQ=255) tCGTTCTCAAAATCGATGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgt > 1:1004758‑M1/1‑87 (MQ=255) ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCt > 2:1974717/1‑149 (MQ=255) ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgttt > 1:1565776‑M1/1‑82 (MQ=255) tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgtgtcgtttctccat < 2:1351064‑M1/149‑69 (MQ=255) cAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAGGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACGTCCTTGTGAAATCTCCCTTTcc > 2:1754206/1‑149 (MQ=255) aaaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctc > 1:388141‑M1/1‑79 (MQ=255) aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCtt < 1:976229/144‑1 (MQ=255) aTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattagga < 2:433153‑M1/149‑74 (MQ=255) tCGGTGGAGCTGCATGACAAAGTTATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATa > 2:1069859/1‑149 (MQ=255) gaagatGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTCCTTTGAGTATAACACCCTTGTGAAGTCTCCCTTTCCTCATa > 1:676187/6‑144 (MQ=255) aGCTGCATGACACAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATAcc > 1:1428987/1‑144 (MQ=255) gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagc > 1:1222794‑M1/1‑64 (MQ=255) gCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCtt < 1:1809402/144‑1 (MQ=255) cATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaat > 2:1611387‑M1/1‑63 (MQ=255) tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagcttt > 1:299923‑M1/1‑61 (MQ=255) gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGGCATTACCGACAATCCGTAAGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTACCTTTCCTCATACCGCTTGCACtatat > 2:794574/1‑149 (MQ=255) aaaGTCATCGGGCATTGTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAGATCCTTGTGAAATCGCCCTTTCCTCATGCCGCTTGCACTATATACt > 2:1248667/1‑149 (MQ=255) tcctcggGCGTTATCTGAACAGAAAACACTATCAATAAGTTGTGGTCATTACCttatctttactaataatctgactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcac < 1:1092667‑M1/141‑92 (MQ=255) tCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaa < 2:1273293‑M1/149‑97 (MQ=255) tCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattccgtcgtttctccattaggagtaaagctttaatgtcccctgca > 2:1571779‑M1/1‑53 (MQ=255) aTCGGGCATTATCTGAACATAAAACACTATCAATACGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgattgaccgagttgggattgcgtcgtttctccattaggagtaaacctttactgtcaccg > 1:1595706‑M1/1‑51 (MQ=255) aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacct < 1:1356497‑M1/144‑94 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgca > 1:1680676‑M1/1‑48 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGa > 2:896293/1‑149 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGAATTGTCTACTTTGAGTATAACATCCTTGTGAAAGCTCCCTTTCCTCATACCGCTTGCACTATATACTGCggt > 1:795594/1‑143 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAACTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcac < 2:14043‑M1/149‑103 (MQ=255) cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTa < 1:1623463/144‑1 (MQ=255) cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGaaa < 2:813972/149‑1 (MQ=255) aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAg < 2:1557436/149‑1 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatctttacctgtttgaccgagttgggattgcgtcgtttctcctttcggggtaaatctttaatgtcccctgaggttcacagaatga > 2:756455‑M1/1‑40 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataa < 2:1118875‑M1/149‑110 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGaaa < 1:746355/144‑1 (MQ=255) cttcaCATCACACACTATCCATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATCCCGCTTGCACTTTATACTGCGGGTAGGAAAg < 1:15441/140‑1 (MQ=255) cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTCGGAAAg > 1:1173991/1‑144 (MQ=255) tGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAgg > 1:1392291/1‑144 (MQ=255) tGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAgg < 1:708150/144‑1 (MQ=255) gAACATAAGACACTATCAATAAGTTGGAGCCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCCATATATACTGCGGGTAGGAAAGgc > 1:209215/1‑144 (MQ=255) aTAAAACACTATCAATAAGTTGGAGTCATCACCGACAATACGTACGCTTGAGATCAGGATCGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGgcgcgc > 1:1297074/1‑144 (MQ=255) tAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAGTGTCTACTTTGGGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCa < 1:102401/144‑1 (MQ=255) aaaaCACTATCCATAAGTTGGAGTCATTTCCttatctttactattaatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttcaccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaa < 1:1186498‑M1/144‑114 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaa < 1:1770468‑M1/144‑114 (MQ=255) aaaaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTCATTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCCCTATATACTGCGGCCAGGCAACGCCCGCACCGGGa > 2:58621/1‑149 (MQ=38) aaCACTATCAATAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggtta < 2:829396‑M1/149‑121 (MQ=255) tctCAAGAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATaa < 2:246276/147‑1 (MQ=255) acttaGTTGGCGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGAtt < 2:313004/145‑1 (MQ=255) aaTAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgag > 1:1042400‑M1/1‑20 (MQ=255) aTAAGTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttcactggggtttgattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatag < 2:1445675‑M1/149‑131 (MQ=255) aTAAGTTGGAGTCATTACCttatctttactaataatcagactaatatataactatatgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataagcaacaggttatgagctatag < 2:1440992‑M1/149‑131 (MQ=255) aTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAGCATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTg > 2:1324462/1‑149 (MQ=255) tacgtggagTCATTACCctatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagcta < 1:822493‑M1/140‑128 (MQ=255) gTTGGAGTCATTTCCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCAAACCACTTTCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTaa < 2:880446/149‑1 (MQ=255) gTTGGAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctata < 1:504109‑M1/144‑130 (MQ=255) gTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACGTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTaa > 2:1521340/1‑149 (MQ=255) gAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatagcaatattc < 2:1809510‑M1/149‑139 (MQ=255) gAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatagcaatattc > 2:705335‑M1/1‑11 (MQ=255) gAGTCATTACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttccccattaggagtacagctgtaatgtcacctgaagttcacagaataaggaaccggttataggctctagcactattc > 2:1748349‑M1/1‑11 (MQ=255) ccATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACt < 1:627298/143‑1 (MQ=255) aTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTAt > 1:132689/1‑144 (MQ=255) aTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTAt > 1:882139/1‑144 (MQ=255) ttACCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctggagttcacagaataaggaacaggttatgagctatagcaatattct > 1:1247234‑M1/1‑5 (MQ=255) ttACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCct > 2:1737463/1‑149 (MQ=255) ttACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCGCCCTTTGCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGGGGGGAATATAAGATGGTTAACTATc > 1:789632/1‑144 (MQ=255) aCCttatctttactaataatcagactaatatttacctgtttgaccgagttgggattgcgtcgtttctccattaggagtaaagctttaatgtcacctgaagttcacagaataaggaacaggttatgagctatagcaatattcttgtcgct > 2:1644561‑M1/1‑3 (MQ=255) cGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGCAGGCAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATccccc > 1:561694/1‑144 (MQ=255) | TTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTGG > CP009273/1045856‑1046149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |