Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,774,5120AG21.9% 147.3 / 11.4 85intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (49/15);  new base G (3/15);  total (54/31)
Fisher's exact test for biased strand distribution p-value = 6.20e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGT  >  CP009273/3774365‑3774658
                                                                                                                                                      |                                                                                                                                                      
gAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGCGAGGGCC‑GGGGT‑GAg                                                                                                                                                       >  2:1286089/1‑149 (MQ=255)
 aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGG‑GAgg                                                                                                                                                      >  2:1897652/1‑149 (MQ=255)
  aggCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAggg                                                                                                                                                     <  2:1541056/147‑1 (MQ=255)
    gCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGggg‑gaggg‑g‑‑a                                                                                                                                                >  2:1368951/1‑149 (MQ=255)
      ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGGA‑GGGGG‑GGGGG‑G‑‑a‑aa                                                                                                                                             >  2:498940/1‑149 (MQ=255)
      ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑a‑aa                                                                                                                                             <  2:1945613/149‑1 (MQ=255)
       gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAggg                                                                                                                                                     <  1:690796/144‑1 (MQ=255)
       gCATAGTCGGTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAggg                                                                                                                                                     <  1:1318685/144‑1 (MQ=255)
         aTAGTCGTTTGCCCCCCCCCACCCTAACCCTCTCCCTCAGGGAGGGGGGACCGTGCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCACATTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAgg                                                                                                                                          <  2:392010/149‑1 (MQ=255)
          tAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGc                                                                                                                                         >  2:277698/1‑149 (MQ=255)
          tAGTCGTTTGCGCCCCCCCCCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑a‑a                                                                                                                                              <  1:877343/144‑1 (MQ=255)
           aGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGG‑GGGGG‑G‑‑A‑AAAGGcc                                                                                                                                        >  2:802091/1‑149 (MQ=255)
                     gcCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACt                                                                                                                                   >  1:1035210/1‑144 (MQ=255)
                        cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCt                                                                                                                                >  1:1166467/1‑144 (MQ=255)
                         ccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGGGGGCC‑GGGGT‑GAGGG‑G‑‑A‑CAAGGCCGCACTGCTCACCaa                                                                                                                          >  2:413210/1‑149 (MQ=255)
                          cTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGCCAACGCACTCTTTTTTTTTCTTTCTCCCCTC‑GGGGGAGGGCGCC‑GGGGT‑GATGG‑G‑‑A‑CAGGGTGGGACTGCTCa                                                                                                                              >  1:51394/1‑144 (MQ=255)
                          cTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCa                                                                                                                              >  1:1270562/1‑144 (MQ=255)
                               ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAAt                                                                                                                         >  1:921382/1‑144 (MQ=255)
                               ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGCGAGAGGCCC‑GGGGT‑GAGGG‑C‑‑A‑AAAGGCCGCACTGCTCACCAAt                                                                                                                         >  1:152840/1‑144 (MQ=255)
                                  tccccTCTCCCTGAGGGAGAGGGTACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCTTTCGCCCCTC‑CGGGGCGAGGGCC‑GGGGT‑GCGTG‑G‑‑A‑AAAGGCCGCACTGCTCACCAAgttt                                                                                                                      >  1:433114/3‑144 (MQ=255)
                                    cccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACGGCTCACCAATTTTCt                                                                                                                    >  1:1716205/1‑144 (MQ=255)
                                      ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGG‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                                                                             >  2:1577561/1‑149 (MQ=255)
                                       tctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                                                                 >  1:769637/1‑144 (MQ=255)
                                       tctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCATAACTCTGAAACGACGCCGCACTCTTTTTGTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGAGCACCACTTTTCTGCTTTCCt                                                                                                            >  2:670520/1‑149 (MQ=255)
                                               aGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc                                                                                                    >  2:776249/1‑149 (MQ=255)
                                               aGGGAGAGGGGACCGTTCGGCGCTGTATGCACTCCCTCACTCTGAAACGACACAGCACTCTTTTTTTATCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCAACAATTTTCTGTTATCCTGCCCCCGc                                                                                                    >  2:1208631/1‑149 (MQ=255)
                                                 ggAGAGAGGACCGTTCGGCGCTGATTGTACTCCCGCACTCTGAAACGACACCGCACTCGTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                                                                       >  1:1065130/1‑144 (MQ=255)
                                                         gatcgcgcGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                                                                                               >  1:676711/8‑144 (MQ=255)
                                                         gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                                                                                               >  1:721924/1‑144 (MQ=255)
                                                            cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCGGCTATCCTGCCCCCGCACTAAGGGGGCAg                                                                                       >  2:582029/1‑149 (MQ=255)
                                                            cGTCCGGCGCTGTATGTCCCCCCTCCCTCGGAACGGCCACCGCCCTCTTTTTTCCTCCCTCCCCCCCC‑CGGGGAGGGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACCAAggg                                                                                            <  1:1018357/144‑1 (MQ=255)
                                                             gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                                                                      >  2:1507496/1‑149 (MQ=255)
                                                              ttCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                                                                                     >  2:878960/1‑149 (MQ=255)
                                                              ttCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGACGGCC‑CGGGT‑GAGGG‑G‑‑A‑AAAGGCGGCACTGCTCACCAATATTCTGCTATCCTGCCCCCGccccacaggcg                                                                                          >  1:180902/1‑134 (MQ=255)
                                                              ctCGGCGTTGTCTGTCCCCCCCCACCTTGAACCGCCCCCGCACTTTTTTTTCCCCCCCCGCCCCGC‑GGGGGGGGGGGCG‑GGGGG‑GGGGG‑A‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                                                                          <  1:840296/143‑1 (MQ=255)
                                                                   cggtgtatgtcCCCCCCCCCTCTGACACGACACCCCTCTCTTTTTTTCCCCCCCCCCCCCC‑GGGGGGGGGGGCG‑GGGGG‑GGGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                                                                                     <  1:158546/141‑1 (MQ=255)
                                                                   cgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGG‑GAGGG‑G‑‑A‑AAAGGCCGCCCTGCTCACCAATTTTCTGCTATCCCGCCCCCGCACTAAGGGGGCAGtc                                                                                     >  1:1212696/1‑143 (MQ=255)
                                                                     cTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTTCTCTCTTTTT‑CGTGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCCGTATg                                                                                   >  1:1303336/1‑144 (MQ=255)
                                                                      tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAGGc                                                                                  >  1:1068646/1‑144 (MQ=255)
                                                                            taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAcc                                                                            >  1:1442386/1‑143 (MQ=255)
                                                                                 ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGTGAGGGCC‑GGGGT‑GGGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTGAGGGGGCGGTATGCTAAACATCGTACtttt                                                                  >  2:542336/1‑148 (MQ=255)
                                                                                  cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc                                                                      >  1:1662329/1‑144 (MQ=255)
                                                                                    ccctgtaaaccGACACCCCATTC‑TTTTTTCCCCCCCCCCCCCC‑CGGGGGGGGGGCCGGGGGT‑GGGGG‑A‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAGCTTAcgt                                                                    <  1:316500/134‑3 (MQ=255)
                                                                                       tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc                                                            >  2:208299/1‑149 (MQ=255)
                                                                                       tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc                                                            >  2:1123333/1‑149 (MQ=255)
                                                                                          aaccccccccccccctctTTTTCTC‑CCCTCCCCCCCCGGGGGGGGGGGGCG‑GGGGG‑GAGGG‑C‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa                                                         <  2:705698/135‑1 (MQ=255)
                                                                                           agcgcaccccGCCCTTTTTTCTCCCCCCCCCCCCCCC‑CGGGGGGGGGCCG‑GGGGT‑GGGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc                                                             <  1:1033190/136‑1 (MQ=255)
                                                                                           aaaCGCCCCCCCCCTTTTTTTTCCCCCCCCCCCCCCC‑GGGGGAGAGGGCG‑GGGGG‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAc                                                             <  1:730536/144‑1 (MQ=255)
                                                                                            ccgcccccccctctctTTTTTTCTCCC‑CCCCCCGC‑CGGGGGGGGGGCC‑GGGGTGGGGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa                                                       <  2:221992/137‑1 (MQ=255)
                                                                                                 ccgcccctcctTTTTTTCTCCCCCCCCCCCC‑CGGGGGGGGGGCG‑GGGGG‑GGGGG‑GA‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaa                                                        <  1:1261809/135‑1 (MQ=255)
                                                                                                    cGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTc                                                    >  1:812798/1‑144 (MQ=255)
                                                                                                    cGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGAGAC‑GGGGT‑GTGGG‑G‑‑A‑AAAGCGCGCAGCGCTCACTAATTTTCTGCTATCCTGCCCCAGCACTAAGGGGAAAGTATGCTAAACATCGTACTTTACGCACCAGAAATTc                                                    >  1:208202/1‑144 (MQ=255)
                                                                                                     gcgctctTTTTCTCCCCCTCCCCCGCG‑CGGGGAGAGGGCC‑GGTGT‑AAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTcc                                                   <  1:1616715/141‑1 (MQ=255)
                                                                                                     gccctttttttctCTCCCCCGCCGCCG‑GGGGGAGGGGGCG‑GGGGG‑GGGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCaa                                              <  2:205348/143‑1 (MQ=255)
                                                                                                         tctTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCAGCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATAc                                          >  2:174516/1‑149 (MQ=255)
                                                                                                          ctTTTTTCCCCCCCCGCCCCGC‑GGGGGAGGGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACt                                         <  2:1192745/149‑1 (MQ=255)
                                                                                                            ttttttCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCaaaa                                            >  1:1594581/1‑143 (MQ=255)
                                                                                                            ttttttCCCCCCCCCCCCCC‑GGGGGGGGGGGGC‑GGGGG‑GGGGG‑GA‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTg                                        <  2:1625792/149‑1 (MQ=255)
                                                                                                              tttccccccccccccccc‑CGGGGAGGGGGGC‑GGGGTGGAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGc                                      <  2:86056/137‑1 (MQ=255)
                                                                                                              ccccggcccTCTCCCCGG‑AGGGGCGAGGGCC‑GGGGG‑GAGGG‑G‑‑A‑CAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCCGTATGCTAAACAGCGTACTTTACGAACCAGAAAGTCCGCCAAAGAc                                          >  1:152311/7‑144 (MQ=255)
                                                                                                                   tcCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAcatc                                >  2:231425/1‑149 (MQ=255)
                                                                                                                    cccgccccccGC‑GGGGGAG‑GGGCC‑GGGGTGGGGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCaa                                    <  1:255539/138‑1 (MQ=255)
                                                                                                                     ccTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACGAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAc                                   >  1:14139/1‑144 (MQ=255)
                                                                                                                      cctctccccggaggggCGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAc                                   >  1:307678/13‑144 (MQ=255)
                                                                                                                      cTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCACGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAAca                                  >  1:1213643/1‑144 (MQ=255)
                                                                                                                       ccccccccc‑GGGGGGGGGGGCG‑GGGGT‑GGGGG‑A‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATcc                            <  2:1166405/146‑1 (MQ=255)
                                                                                                                        cccccctctgggggggggggCC‑GGGGT‑GGGGG‑A‑‑A‑AAAGGCCGCAATGCTCACCTATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATcc                            <  2:1846206/139‑1 (MQ=255)
                                                                                                                         gCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCACAAATTCCGCCAAATACTGGCAAcatca                               >  1:1018798/1‑144 (MQ=255)
                                                                                                                           cccTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCATGCCCCCGCACCAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCCCCAAAAACTGGCAACATCATCCGTCt                        >  2:1947730/1‑149 (MQ=255)
                                                                                                                            cccgcgggggggggggCG‑GGGGG‑GGGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACatcatc                             <  1:601335/138‑1 (MQ=255)
                                                                                                                            ccTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATCCCGCCAAATACTGGCAACATCATcc                            >  1:1231808/1‑144 (MQ=255)
                                                                                                                            ccTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCATGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAGTCCGCCAAATACTGGCAACATCATCCGTCtt                       >  2:1333196/1‑149 (MQ=255)
                                                                                                                             cTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCttt                      >  2:1514908/1‑149 (MQ=255)
                                                                                                                             cTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACAACATCCg                           >  1:556421/1‑144 (MQ=255)
                                                                                                                               c‑cGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTc                         >  1:468752/1‑144 (MQ=255)
                                                                                                                                 gggggATGGGGCC‑GGGGT‑GAGGG‑A‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCt                        <  1:503663/143‑1 (MQ=255)
                                                                                                                                  ggggAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAGGGGGGCAGTATGCTAAACATCGTGCCTTACGACCCAGAAATGCCCCCAAATACCGACACCAGCAGCCGTCTTTccgc                  >  2:501632/1‑149 (MQ=255)
                                                                                                                                   gggAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGACATTCCGCAAAATACAGGCAAGACCAGCCGTCTTTGCGCt                 >  2:39411/1‑149 (MQ=255)
                                                                                                                                   gggAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCt                 >  2:294168/1‑149 (MQ=255)
                                                                                                                                     gggagGGCC‑CGGGG‑GGGGG‑GCAA‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCt                 <  2:530214/147‑1 (MQ=255)
                                                                                                                                        gggcccgggggC‑GGGGG‑A‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGCGGCAGTATGCTAACCATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTgcgc                  <  1:90808/137‑1 (MQ=255)
                                                                                                                                        agcggc‑GGTGT‑GAGGG‑G‑‑A‑ACAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCt                 <  1:691619/139‑1 (MQ=255)
                                                                                                                                           gCC‑GGGGT‑GGGAG‑C‑‑ACAAAGGCCGCACCGCCCACCACTTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTCGCAACATCATCCGTCTTTGCGCTaa               <  1:524036/144‑1 (MQ=255)
                                                                                                                                            cc‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACGAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATa             >  1:970093/1‑144 (MQ=255)
                                                                                                                                                gggT‑GCGGGTG‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATAcc           <  1:346551/144‑1 (MQ=255)
                                                                                                                                                   t‑GAGGG‑G‑‑A‑AAAGGCCGAACTGCCCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGt  <  2:333842/149‑1 (MQ=255)
                                                                                                                                                      aGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCttt     >  1:568528/1‑144 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
GAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTC‑CGGGGAGAGGGCC‑GGGGT‑GAGGG‑G‑‑A‑AAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGT  >  CP009273/3774365‑3774658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑