mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,774,512 | 0 | A | G | 21.9% | 147.3 / 11.4 | 85 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | CP009273 | 2,388,249 | 0 | T | C | 20.7% | 259.2 / 32.4 | 137 | T93A (ACT→GCT) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Marginal new junction evidence (lowest skew 10 of 142 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3938338 | NA (NA) | 26 (0.230) | 14/280 | 11.3 | 40.4% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4032171 | 40 (0.340) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 26 (0.230) | 14/280 | 11.3 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223539 | 82 (0.700) | 26 (0.230) | 14/280 | 11.3 | 24.9% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 1092417 = | 138 (1.170) | 10 (0.130) +47 bp |
6/198 | 12.0 | 9.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1092699 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | 1092417 = | 138 (1.170) | 10 (0.130) +47 bp |
6/198 | 12.0 | 10.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1092518 = | 108 (0.920) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | CP009273 | = 4158301 | 76 (0.650) | 8 (0.120) +66 bp |
3/160 | 12.2 | 14.2% | noncoding (2/76 nt) | gltT | tRNA‑Glu |
| ? | CP009273 | = 4199681 | 101 (0.860) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | CP009273 | 2722802 = | 73 (0.620) | 8 (0.120) +66 bp |
3/160 | 12.2 | 14.4% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | CP009273 | = 4199681 | 101 (0.860) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | CP009273 | 376748 = | NA (NA) | 14 (0.130) | 10/274 | 13.0 | NA | intergenic (‑33/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 376768 = | NA (NA) | intergenic (‑53/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 3940048 | 137 (1.160) | 23 (0.200) | 9/280 | 13.8 | 14.9% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4161529 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | = 4161535 | 74 (0.630) | 23 (0.200) | 8/280 | 14.4 | 24.5% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4202950 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||