| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,440,869 | Δ1 bp | 5.3% | coding (672/906 nt) | feaR ← | transcriptional activator for tynA and feaB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,440,869 | 0 | A | . | 5.3% | 191.9 / 6.7 | 75 | coding (672/906 nt) | feaR | transcriptional activator for tynA and feaB |
| Reads supporting (aligned to +/- strand): ref base A (39/29); new base . (2/2); total (43/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.53e-01 | |||||||||||
AATGAAAGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATC > CP009273/1440724‑1441016 | aaTGAAAGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTCCTCACAGAccg > 1:1146144/1‑148 (MQ=255)aaTGAAAGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAAAATTCGGTAAAAACTACGTACTGACATACCt < 1:647625/149‑1 (MQ=255)aaTCAAATCTGATGCCTTCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACTGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CCGCAAACATTCGGTACAAACTACGTACTGACATACCt < 1:609636/149‑1 (MQ=255) aTGAAAGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCACAACTTTAA‑‑CGGCAAACATTCGGTACAAACTACGTACTCACATACCTg > 2:660149/1‑149 (MQ=255) gAAAGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGtc < 1:1161976/149‑1 (MQ=255) aaGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGCATCGCATCTGCACAAAAATCGAGACGACGGTTCCGAATATATTGCGCGCCTACCACACCTTTAT‑‑CGGCAAACATTCGGGACAAACTACGTACTGATGTACCTGtctc > 1:520120/1‑149 (MQ=255) aaGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGGACTGACATACCTGtctc > 1:418994/1‑149 (MQ=255) aaGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAAGCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTAATGACATACCTGtctc > 2:1127387/1‑149 (MQ=255) gcctccaatttttgCACCATTCGCGGCATGCCGAGTCGCATCTGCACAAAAACCGAGCCGACGGTTACGAATATATTGCGCTACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTa < 2:332938/140‑1 (MQ=255) ctgccAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATc < 2:664136/149‑1 (MQ=255) tgtcAGTTTTTCATCATCTGAGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCGTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATcc < 1:236980/146‑1 (MQ=255) tttttCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCg > 1:1145021/1‑149 (MQ=255) tttCATCATCTGCGGCATGGCGAATAGCATCTGCACAAAAATCGAGACGACGGTTACGACTGTATTACGCGACTACCAAACCTTTAT‑‑CGGAAAACATTCGGTACAAACTACGTACTTACCTACCTGTATCCCCGGCTATGCAATCCggg > 1:742333/1‑149 (MQ=255) catcatCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCCGGCGt > 1:661416/1‑149 (MQ=255) catcatCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCGCTCCGGCTATCCACCCCGGGCGt > 2:319995/1‑149 (MQ=255) tcatcTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTaa > 1:1217730/1‑149 (MQ=255) tGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCCCGCCGGGCGTAGTAtct > 1:661376/1‑149 (MQ=255) tGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATAtct > 2:807295/1‑149 (MQ=255) cGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAACCTACGTACTGCCATCCCTGTCTCTCCGGCTATCCACTCCGGGCGTCATATctct > 2:477400/1‑149 (MQ=255) cGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATctct < 1:319508/149‑1 (MQ=255) gCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTc > 1:885031/1‑149 (MQ=255) aTGGCGAATCGCATCGGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTcgc < 1:80086/149‑1 (MQ=255) tGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTCCAAACTACGTACTGACATACCTGTCTCTCCGGCGATCCACACCGGGCGTAATATCTCTTcggg > 2:170477/1‑147 (MQ=255) ggCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATACTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTCATAGCCCTTCGCGa > 2:180416/1‑149 (MQ=255) gCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTcgcgga > 1:757243/1‑147 (MQ=255) gCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGaa < 2:30466/149‑1 (MQ=255) cGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCCTACTATCCCTTGGCGAat > 2:486995/1‑149 (MQ=255) tcttGCACAAAAATGCGGCGGACGGTCACCAACATATTGCGCGACTACCAAGCCTTGAT‑‑CGGCAACCACTCGGTGCTAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTGCGCGAATATTATCGt < 2:109335/146‑1 (MQ=255) aTCTGCACAAAAATCGAGACGACGGTTACGAATAGATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTGCGTACTGACATACCTGTCTCTCCGGCTATCCCCTCCGGGCGTAATATCTCTTCGCGAATATTATCGt < 2:1169135/149‑1 (MQ=255) cTGCACAAAAATCGAGACGACGGTTACGAATATTTTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCt > 1:796659/1‑149 (MQ=255) cTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCCCTTCGCGAATATTATTGTCt > 1:707007/1‑149 (MQ=255) tGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTCCAAACTACGTACTGACAT‑CCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTAt > 2:1153536/1‑149 (MQ=255) tGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACAT‑CCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTAt > 2:786278/1‑149 (MQ=255) acaAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAACCCTTTAT‑‑CGGCAAACAATCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTGTCCACTCCGGGCGGAATATCTCTTCGCGGATATTATCCTCAATcg > 1:700576/1‑148 (MQ=255) acaAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCa < 1:767192/149‑1 (MQ=255) acaAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCa > 1:949558/1‑149 (MQ=255) acaAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCa < 1:307026/149‑1 (MQ=255) acaAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCCCTTCGCGAATATTATCGTCTCTCa > 1:462322/1‑149 (MQ=255) acaAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTCTAT‑‑CGGCAAACATTAGGAACCAACAACGTACTGCCATACCCGTCTCTCCGGCTATCCACTCCGGGCGTGATATCACTTCGCCCATATTTTCGTCCATCa > 2:687902/1‑149 (MQ=255) aaaaaTCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTCCGCGAATATTATCGTCTATCAAc > 1:275586/1‑149 (MQ=255) acaaTCGAGCCGACGGTTACGAATACATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACg < 1:357670/147‑1 (MQ=255) tCGAGACGACGGGTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAAc < 1:7607/149‑1 (MQ=255) gcGAGACGACGGTTACGAATATACTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACAGTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAAc < 2:95715/148‑1 (MQ=255) cgacgGTTACGAATATATGGCGCGACTACCAAACCTTTATGCCAGCAAA‑A‑TCGAAAAGAAATTTTACCTAACATCCCTGTCTCTCCGGCTATCCACTCCGGGCGTAGTATCTCTTGGCGAATTTTATCGTCTATCACCGTAACCACtgc > 1:909350/1‑147 (MQ=255) gacgGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACtttt > 2:733054/1‑149 (MQ=255) ttACGAATATATTGCGCGACTACCAACCCTTTAC‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGaaa < 2:98119/149‑1 (MQ=255) gAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCAACTCCGGGCGTAATATCCCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTGTAAACtta > 2:14029/1‑147 (MQ=255) aaTATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACACCTTTTTGAAACTGAc > 2:1180682/1‑149 (MQ=255) gcgcGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCCCTTTTTGAAACTGACGTTCacga > 2:774450/1‑149 (MQ=255) cgcgACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCacgac < 1:807295/149‑1 (MQ=255) gcgACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCCCACGGCGAAAATTATCGTCTAGCAACGTAACCACTTTTTGAAACCGGCGATAacgacg > 2:603222/1‑149 (MQ=255) ccaCTACAAACCTTTTAC‑‑CGGCAAACATTCGGTACAAACTACGTACTGCCATCCCTGTCTCTCCGGCTATCCTCTCCGGGCGTAATACCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCAcgacga < 2:175797/147‑1 (MQ=255) gACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGCATATTATCGTCTTTCAACGTAACCATTTTTTGATAGTGACGTTCACGACGAg > 1:998063/1‑149 (MQ=255) cAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGaa > 2:1144950/1‑149 (MQ=255) aCCTTTAT‑‑CGGCAAACATTCGGTACAAACCACGTACTGACATACCTGCCTCTCCGGCTAGCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAg < 1:235878/149‑1 (MQ=255) aactgtaatttgCAAAAATTCTTTACAAATGACGTACTGCGATACCTGTCTCTTCGGCTATCCACTTCGGGCGTAATATATCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACa < 1:1181734/138‑1 (MQ=255) cTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTAACGCCGAGGTTGAACAGAt > 2:543267/1‑149 (MQ=255) cTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTCAACGACGGGGTTGAACAGAt > 2:121450/1‑149 (MQ=255) t‑‑CGGCAAACATTCGGTACTAACTACCTACTGCCATACCTTGCTCTCCGGCTATCCACTTCGGTCGTAATATCGCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTCACGTTCACGACGAGGTTGAACAGATTCCCg < 2:854257/149‑1 (MQ=255) gCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACACCGGGCGTAATACCTCTTCGCGAATACTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACACACTccccccg > 2:1189782/1‑145 (MQ=255) gCAAACATGCGGTACAAACGACGGACTGACATACCTGTCTCTCCGGCTGTCCACGCCGGGCGGAATATCTCTTCGCGAAGATTATCGTCTATCAACGTAACCACTTTTTGACACTGACGTTCACGACGGGGATGAACAGATTCCCGccg > 2:1088958/1‑147 (MQ=255) aaaCATTCGGTACAAACTACGTACTGACATACCTGGCTCTCCGGCTATACACTCCGGGCGTAATATCTCTTCGCGCATATTATCTTCTAGCAACGTAACCACTTTTTAAAATTGACTTTCACGACCAGGGAGAACCGATTcccagagat > 2:857024/1‑143 (MQ=255) cATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTAACGACGAGGTTGAACAGCTTCCCGCTGATGaa > 2:524742/1‑149 (MQ=255) aTTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAg < 1:436133/149‑1 (MQ=255) ttCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAATCTGTCGTTCACGACGAGGTTGAACAGATTCCCGCtcaacacgt > 2:127683/1‑141 (MQ=255) gTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCg > 2:727098/1‑149 (MQ=255) aCAAATCACGTACTTACCGACCTGTCTCTCAGGCTATCCACTCCGGGCGTAATATCTCTTCGCGCATATTATCGTCCATCAACGTCACCTCTTTTTGCGACTGACTTTCACGACGGGGTTGAACAGATTCCCGCTGATGAAGTACCggg < 1:186411/149‑1 (MQ=255) aCAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCTAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCggg < 2:900558/149‑1 (MQ=255) aCAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCggg < 1:160854/149‑1 (MQ=255) aaCTACGTACGTACATACCTGTCTCTCCGGCTATCCACTCCGTGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGgcgc < 2:66634/149‑1 (MQ=255) cTACGTACTGACAT‑CCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCgcagc < 1:1153536/149‑1 (MQ=255) cTACGTACTGACAT‑CCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCgcagc < 1:786278/149‑1 (MQ=255) aTACCTGTCTCTCCGGCTATCCCCTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGGCGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCAt < 1:548489/149‑1 (MQ=255) aTACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCAt < 2:1041696/149‑1 (MQ=255) tACCTGTCGTTTCTGTTATCCCTTCCGGGCGTAATAGCTCTTGGCGAATAGTATCGTCTATCAACGTAACCACTTTTGGAAACTGACGTTCACGACGAGGTTGAACAGCTTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATc < 1:382931/149‑1 (MQ=255) | AATGAAAGCCGATGCCTGCCAGTTTTTCATCATCTGCGGCATGGCGAATCGCATCTGCACAAAAATCGAGACGACGGTTACGAATATATTGCGCGACTACCAAACCTTTAT‑‑CGGCAAACATTCGGTACAAACTACGTACTGACATACCTGTCTCTCCGGCTATCCACTCCGGGCGTAATATCTCTTCGCGAATATTATCGTCTATCAACGTAACCACTTTTTGAAACTGACGTTCACGACGAGGTTGAACAGATTCCCGCTGATGAAGTACCGGGCGCAGCAGACACACCATC > CP009273/1440724‑1441016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |