New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	627575 =	NA (NA)	4 (0.060)	3/262	NT	NA	noncoding (5/34 nt)	REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	CP009273	627605 =	NA (NA)					intergenic (+150/‑33)	cstA/ybdD	carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein

TTCGACATAGTTGTCGTAATCAGGCATACCAATCATCAGCTTCGCCGCCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/627727‑627575 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGAT  >  CP009273/627605‑627751                                                                                                                                                                                                                                                                                                              TTCGACATAGTTGTCGTAATCAGGCATACCAATCATCAGCTTCGCCGCCTAACCCAAATATTTACCGGCTCTTGCCAGAAAATCCAAAATATTCGCCCAAGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATC                                                                                                                                                         >  1:254752/1‑149    GACATAGTTGTCGTAATCAGGCATACCAATCATCAGCTTCGCCGCCTGACCTAAATATTTTCCGACTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGGGAACGCCTTATCCGG                                                                                                                                                      >  1:1016742/1‑149     ACATAGTTGTCGTAATCAGGCATACCAATCATCAGCTTCGCCGCCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                                                                                                     <  1:1201753/149‑1             GTCGTAATCAGGCATACCAATCATCAGCTTCGCCGCCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTC                                                                                                                                             <  1:1238273/149‑1             GTCGTAACCAGTGATACCAATCATCAGCTTCGCCGCCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTC                                                                                                                                             <  1:23657/149‑1                                                                                         ATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTATCGGAGGCCCAGATATGTGATTCACTGGCCAAAGCCGGAAAATATTTAAGTGAGGCGCCGAAG                                                                 >  2:858018/1‑149                                                                                                                              CGGATGCGGCGTGAACGCCTTATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGGATGCCTGATTACGACAACTATGTCG                            >  1:106940/1‑149                                                                                                                                                    TCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTAACTGGCAAAAGCCGTAAAATATTTAGGTGAGGCGGCGAAGCTGATGATTGGTATGCCTGATTAGGACAACGATGTGGAACATATGCGGGTTGACCATCC      >  2:246776/1‑149                                                                                                                                                     cctGCACTCTTTCACCAACTTGGGTAGCGGAGTCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAAGATTTAGGTCAGGCGGCGAATCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCC     <  1:562789/146‑1                                                                                                                                                     CCGGCAATCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCC     <  1:158512/149‑1                                                                                                                                                       GGCACTCTTTCAGCTACATGGTTAGCGGAGGCCAAGATGTTTGATGCGCTGGCAAAAGCCGGAAAATATTTAGGTCAGGCCGAGAAGCTGATGATTGGTATGCCTGATTAGGACAACTATGTCGAACATATGCGGGTTAACCATCCCGA   <  2:994666/149‑1                                                                                                                                                       GGCACTCTTTCAGCAACACGGGTAGCGGAGGCCAAGATGGTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGA   <  2:94867/149‑1                                                                                                                                                        GCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATAGGCGGGTTAACCATCCCGAg  >  2:671558/1‑148                                                                                                                                                                                                                                                                                                              TTCGACATAGTTGTCGTAATCAGGCATACCAATCATCAGCTTCGCCGCCTGACCTAAATATTTTCCGGCTTTTGCCAGTGAATCAAACATCTTGGCCTCCGCTAACCATGTTGCTGAAAGAGTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/627727‑627575 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCATCCCGAT  >  CP009273/627605‑627751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.