New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1046001	66 (0.940)	54 (0.770)	35/276	NT	55.4%	intergenic (+15/+418)	insB1/cspH	IS1 transposase B/stress protein, member of the CspA‑family
	?	CP009273	1973115 =	21 (0.300)					intergenic (‑661/‑119)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

AATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045854‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGT  >  CP009273/1973115‑1973256                                                                                                                                                                                                                                                                                                    AATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGATGTCGTTGTCAAAATCAGTGGAGCAGCATGACAAAGTCTTCGGGCTTTATCTTAACATTAAACACTATCTATAAGTTGGAGTCATTACCT                                                                                                                                               >  1:47923/1‑149    TGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTAT                                                                                                                                            >  1:1229866/1‑149     GAGCGGTATAACCTGACTCGGCGGCAGCACCTGGCACGACTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACATAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATC                                                                                                                                           <  2:1157487/149‑1      AGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATAAATAAGTTGGAGTCATTACCTTATCT                                                                                                                                          >  1:531177/1‑149        CGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTT                                                                                                                                        >  2:249032/1‑149         GGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTga                                                                                                                                       <  2:632071/149‑3          GTATAACCTGAATCCGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTAC                                                                                                                                      <  2:1079486/149‑1           TATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACT                                                                                                                                     >  2:942606/1‑149             TAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAA                                                                                                                                   <  2:1107297/149‑1                  TGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATGAAACACTATCAATAAGGTCGAGGCAGTCCCTCATCTTTACTAATAATC                                                                                                                              >  2:507688/1‑149                   GAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTAGCTTTACTAATAATCA                                                                                                                             >  1:326429/1‑149                   GAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTAGCTGTCGTTCTCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGTATCTTTACTAATAATag                                                                                                                             >  2:1173036/1‑147                            GCAGCACCTGGCACGGCTGGGACGTAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATAT                                                                                                                    >  1:921640/1‑149                            GCAGCACCTGGCACGGCTGGGACGGACGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATAT                                                                                                                    <  2:334510/149‑1                            GCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACCTCCAATACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATAT                                                                                                                    <  1:241916/149‑1                                    tgcCACGGCTGGGACGCGAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACTTAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGT                                                                                                            <  2:832928/146‑1                                         CGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGACCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGAC                                                                                                       >  1:602386/1‑149                                          GGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACC                                                                                                      <  2:464572/149‑1                                           GCTGGTACGGAAGTCGCTGTCGTTCTCCAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCG                                                                                                     >  1:1173775/1‑149                                                                GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGCTTGGGTCCGTTCT                                                                                >  2:295989/1‑149                                                                 TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTC                                                                               <  1:493328/149‑1                                                                 TTCTCAAAATCGGTGGAGCTGCAAGACAAAGTCATCGGGCCTTATCTGAACACAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTATATTAATAACCAGCCTCATGCTGACGGGTTTGACCGAGTTGGGATTGCGTCGTTTCTC                                                                               <  1:605375/149‑1                                                                    aCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                            >  2:603335/2‑149                                                                    TCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                            <  1:508943/149‑1                                                                    TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACCCTATCAAGAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                            <  1:1025504/149‑1                                                                    TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                            <  1:925217/149‑1                                                                    TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTGACTAAGAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                            >  1:717015/1‑149                                                                     CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATT                                                                           >  1:1113419/1‑149                                                                     CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATT                                                                           >  1:121227/1‑149                                                                     CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATT                                                                           >  2:1082986/1‑149                                                                     CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTGGGGATTGCGTCGTTTCTCCATT                                                                           >  1:964154/1‑149                                                                      AAAATCCGTGGAGCTGCATGACAAAGTCATCGCGCATTACCTGAACATAAAACACTATCAACAAGTTGGAGTCATTACCTTATCTTTACTAACAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTCCTCCATTA                                                                          <  2:721113/149‑1                                                                           CGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGT                                                                     <  2:47923/149‑1                                                                                 AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCT                                                               >  1:311655/1‑149                                                                                 AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGACTAAAGat                                                               >  1:633618/1‑147                                                                                         GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTC                                                       >  1:910801/1‑149                                                                                                TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTAAA                                                >  2:399074/1‑149                                                                                                 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAG                                               >  1:1109173/1‑149                                                                                                     GGGCATTATCTGAACATAAGACACTGTCTCTTAGTTTGAGTCATTAACTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAGTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCA                                           <  1:470952/149‑1                                                                                                      GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCCTTACCTTATCTTTACTCATAATCCGACTAATATTTACCTGTTTGACCGAGTGGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCAC                                          <  2:602232/149‑1                                                                                                       GCATTATCTGAACATACAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGGGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACA                                         <  1:401546/149‑1                                                                                                             TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAA                                   >  2:50905/1‑149                                                                                                              CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAG                                  <  2:921640/149‑1                                                                                                               TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGG                                 >  2:1040651/1‑149                                                                                                               TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGG                                 >  1:1115139/1‑149                                                                                                               TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGG                                 >  1:810804/1‑149                                                                                                               TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGAAAAGCTTTAATGTCACCTCAAGTTCTCAGAAAAAGG                                 >  2:958190/1‑149                                                                                                                 AACATAAAACACTATCCATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAA                               <  2:526802/149‑1                                                                                                                 AACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAA                               >  1:1060525/1‑149                                                                                                                   CATAAAACACTATCAATAAGTTGGAGTCGTTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACA                             >  1:686698/1‑149                                                                                                                   CATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATAGCGTCGTTTCTCCATTAGGAGAACAGCTTGAATGTCACCTGAAGTTCACAGAATAAGGAAaa                             >  1:840385/1‑147                                                                                                                    ATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAG                            <  2:121227/149‑1                                                                                                                                  ATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAG              <  2:238696/149‑1                                                                                                                                       TTGGAGTCCTTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATA         <  2:1132065/149‑1                                                                                                                                       TTGGAGTCATTACCTTATCTTTACTAATACTCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATA         <  1:356348/149‑1                                                                                                                                       TTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATA         <  1:608600/149‑1                                                                                                                                            GTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGTTTATGAGCTATAGCAATATTCTT    <  1:811326/149‑1                                                                                                                                              ccTTACCCTATCTTTACTAATAACCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAGTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGT  <  1:870610/147‑1                                                                                                                                                                                                                                                                                                    AATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045854‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGT  >  CP009273/1973115‑1973256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.