New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2420396	56 (0.800)	9 (0.130)	6/276	NT	13.8%	intergenic (‑129/+92)	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

ACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCC  >  CP009273/2420254‑2420544                                                                                                                                               |                                                                                                                                                     aCCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAgaa                                                                                                                                                >  1:1232716/1‑147 (MQ=255)   ctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAGATGCTTAAGTATg                                                                                                                                              <  1:150234‑M1/17‑1 (MQ=255)   ctgaatctgaggcagcacctggcacggctggacggggagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATg                                                                                                                                              <  1:300222‑M1/17‑1 (MQ=255)      ttttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTCTGCAt                                                                                                                                           >  1:331878/1‑149 (MQ=255)        ttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCAttt                                                                                                                                         <  2:1160195/149‑1 (MQ=255)        ttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCAttt                                                                                                                                         <  2:75068/149‑1 (MQ=255)        ttttCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAATTATGCAttt                                                                                                                                         >  1:489090/1‑149 (MQ=255)                    cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACg                                                                                                                             >  1:824706‑M1/116‑149 (MQ=255)                     cTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGATTGATACACTTCTCGTGAAATAAAATTTACCATCAAGTCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTGAAACTGCTTAATTATGTAtttgagtgtcgtcgag                                                                                                                            >  2:159882/1‑136 (MQ=255)                      tCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGAAGTATTATTGTGCATTAAGAATGCTTAAGTATGAATTTCAATCCACCACGAt                                                                                                                           >  1:231573/1‑149 (MQ=255)                         aCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGt                                                                                                                        <  1:1149905/149‑1 (MQ=255)                         aCTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGt                                                                                                                        <  1:1174181/149‑1 (MQ=255)                          cTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCAGAAAATGGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCATTGCACCACGATAGTg                                                                                                                       >  2:932801/1‑149 (MQ=255)                             aCAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGAATTTCAATGCACCACGATAGTGcaa                                                                                                                    <  2:990166/149‑1 (MQ=255)                               aGTCTTTTTGTAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatg                                                                                                                  <  2:360061‑M1/149‑37 (MQ=255)                               aGTCTTTTTGTAGGGAATATTTACAGGTTTGTTACACTTATCGGGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatg                                                                                                                  <  2:65961‑M1/149‑37 (MQ=255)                               aGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatg                                                                                                                  >  1:171815‑M1/1‑113 (MQ=255)                                 tCTTTTTATAGGGAATATTTACCGTTTTGCTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACaaa                                                                                                                <  1:895661/149‑1 (MQ=255)                                  cTTTCTATTGGAAATATTTACAGGTTTGTTATACTTTTCGTGCCATAAAATAGACCATCAAGGCAAAATATCCCGCCCAGTTATATCTATTATGTTTCTTTAAAAATACTTTAGTATGCATTTCACTCCTCCACGATAGTGcaacaatc                                                                                                               <  2:1006401/149‑3 (MQ=255)                                    ttttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCt                                                                                                             >  1:392827/1‑149 (MQ=255)                                    ttttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCt                                                                                                             >  1:715808/1‑149 (MQ=255)                                           gggAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGATAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGCTAGTGCAACAAACCTGGCGTGc                                                                                                      >  1:364750/1‑149 (MQ=255)                                            agAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTCAGGCGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACACACCTGGCGTGCa                                                                                                     >  2:636590/2‑149 (MQ=255)                                              aaTATTTACAGGTTTGTTACACTTTTCGTGCTATAAAATTGAACATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCAcc                                                                                                   <  1:28363/149‑1 (MQ=255)                                              aaTATTTACAGGTTTGTTACACTTATCGTGCCTTAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAGCCTGGCGTGCAcc                                                                                                   <  1:845874/149‑1 (MQ=255)                                                   ttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatgat                                                                                              <  2:131367‑M1/65‑1 (MQ=255)                                                   ttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCatgat                                                                                              >  2:1166730‑M1/85‑149 (MQ=255)                                                      cAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTTATAATGCTTAAGTATGCATTTCAATGCACCACGATACTGCAACAAACCTGGCGTGCACCAtgatgac                                                                                           >  2:840906/1‑148 (MQ=255)                                                         gTTTGTTACACTTTTCCTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCAt                                                                                        <  2:208226/149‑1 (MQ=255)                                                         gTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCAt                                                                                        <  2:579018/149‑1 (MQ=255)                                                          tctGTTACACTCATCGTGCCATAAAATTGACCATCAAGCCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATTCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCAtt                                                                                       <  1:169104/147‑1 (MQ=255)                                                            tGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg                                                                                     <  1:73562‑M1/149‑66 (MQ=255)                                                              ttACACTTATCGTGCCATAAAATTGACCCTCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTCTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGAGCATTCCAt                                                                                   >  1:746276/1‑149 (MQ=255)                                                               tACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGAAGTATTATTTTTCATTAAAACTGCTTAAGTATGCATTGCAATGCACCACGATATTGCAACAAACCTGGAGTCCACCATGATCATCATTCCATc                                                                                  >  1:469856/1‑149 (MQ=255)                                                                acacTTATCGTGCCATAAAATTGACCATCAAGGCAATATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCa                                                                                 <  2:392827/149‑1 (MQ=255)                                                                  acTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAgg                                                                               <  2:1018311/149‑1 (MQ=255)                                                                    tcttcggggcATAAAATTGACCTGCAGGGCAAAATTTCCCGCCCCGTTACACGTATTATTTTTCATTATAAATGCTTAAGTATGCATTTCAGTGCACCACGATAGTGCAACAGACCTGGCGTGCACCATGATGATCATTCCATCAGGTa                                                                             <  2:671760/140‑1 (MQ=255)                                                                     tATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCAATCCGGtcc                                                                            >  2:740118/1‑147 (MQ=255)                                                                          tgacaaagtcatcgggcattatctgaacataaaacactatcaataggttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCtt                                                                       >  2:1213708‑M1/62‑149 (MQ=255)                                                                          tGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCtt                                                                       <  1:436587/149‑1 (MQ=255)                                                                              aTAAAATTGACCATCAAGGCTAAATATCCCGCCTCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACTTCGATAGTGCAACAATCCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCa                                                                   <  1:1017961/149‑1 (MQ=255)                                                                               tAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGGAACAAAACTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTcccca                                                                  >  2:663161/1‑147 (MQ=255)                                                                               tAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTTCAGCTTCCCAg                                                                  >  2:117890/1‑149 (MQ=255)                                                                                 aaaTTGACCATCAAGGCAACATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcct                                                                <  2:153764‑M1/149‑87 (MQ=255)                                                                                   aTTGACCATCACGGCAAAATAGCCCGCCCCGTTAGACGTATTATTTTTCTTTAAAAATGCTTCAGTATGCATTTCAATGCACCACGATAGTGCAACATACCTGGCGTGCACCATGATGATCATTCTATCAGGTACAGCTTCCCAGCGAc                                                              <  2:849726/149‑1 (MQ=255)                                                                                      gACCATCAAGCCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTa                                                           <  1:305548/149‑1 (MQ=255)                                                                                         cATCAAGGCAAAATATCCCGCCCTGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCa                                                        <  1:430098/149‑1 (MQ=255)                                                                                          aTCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAACTGGGTAAGGATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAg                                                       >  1:967900/1‑149 (MQ=255)                                                                                          aTCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAg                                                       <  2:1130254/149‑1 (MQ=255)                                                                                             aaGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCa                                                    <  1:786130/149‑1 (MQ=255)                                                                                                 cAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGt                                                >  2:98530/1‑149 (MQ=255)                                                                                                  aaaaTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAGTGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTACCAGCGACGTATCAGTCACCGTa                                               >  1:207164/1‑149 (MQ=255)                                                                                                  aaaaTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGCTAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTa                                               >  1:977565/1‑149 (MQ=255)                                                                                                  aaaaTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACgactaggtcacggtg                                               >  2:1162986/1‑135 (MQ=255)                                                                                                    aaTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCTTTTCAATGCACCACGATAGTGCAACAAACCTGGCGAGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGATGTATCAGTCACCGTAGa                                             <  2:916329/149‑1 (MQ=255)                                                                                                    aaTATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTAACCATAGa                                             >  1:421709/1‑149 (MQ=255)                                                                                                         cccGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCCGCGACGTATCAGTCCCCGTAGACATTa                                        >  2:1169228/1‑149 (MQ=255)                                                                                                          ccGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTaa                                       >  2:1063960/1‑149 (MQ=255)                                                                                                               ccGTTAGGCGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                  <  2:1045746‑M1/149‑117 (MQ=255)                                                                                                               ccGTTAGACGTATTATTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                  <  2:802048‑M1/149‑117 (MQ=255)                                                                                                               acgTTTGACCTATTTTTTTTCATTAAAAATGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                  <  2:331512‑M1/148‑117 (MQ=255)                                                                                                                 gTTAGCTGTATTTTTCTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAAACTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGCATCAGTGACCGTGAACATTAATATCGaa                                >  2:213176/1‑149 (MQ=255)                                                                                                                 gTTAGACGTCTTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGCGAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCGCGAACCGTAGACATTAAGGTCgta                                >  2:595064/1‑147 (MQ=255)                                                                                                                    ataagttggagtcattaccAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATa                             <  2:954566‑M1/130‑1 (MQ=255)                                                                                                                    ataagttggagtcattaccAAAAATCCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATa                             <  1:641850‑M1/130‑1 (MQ=255)                                                                                                                    aGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAAtc                             <  2:331878/149‑2 (MQ=255)                                                                                                                      aCGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTGCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGAGCATTCCATCCGGTCCAGCTTCCCAGCGACGTATCAGTCACGGTCGGCATTAAAGTCGACATACt                           >  1:268045/1‑149 (MQ=255)                                                                                                                         tattatTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACtttt                        >  1:654303/1‑149 (MQ=255)                                                                                                                           ttattTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAATGTCAAAATACttttta                      >  1:149445/1‑148 (MQ=255)                                                                                                                           ttattTTTCATTAAAAATGCTTAAGGATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTc                      >  1:639419/1‑149 (MQ=255)                                                                                                                           ttattTTCCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACACACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTc                      <  2:1157868/149‑1 (MQ=255)                                                                                                                            tattTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCg                     >  2:1035477/1‑149 (MQ=255)                                                                                                                             attTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGc                    <  1:876312/149‑1 (MQ=255)                                                                                                                                         aaaTGCTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgc        <  1:1113098‑M1/149‑143 (MQ=255)                                                                                                                                            tGCTTAAGTCTGCATTTCAATGCACCACGATAGTGCCACAACCCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTGTTCGCCATCTTGTCGTAGGt     <  2:1018014/149‑1 (MQ=255)                                                                                                                                            tGCTTAAGTATGCACTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGt     <  1:2711/149‑1 (MQ=255)                                                                                                                                               ttAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTCGACATTAAAGTCGAAATACTTTTTCTCCTTTTTGTCTTTGATGcc  >  2:353311/1‑149 (MQ=255)                                                                                                                                               ttAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTTTCATAGGTGcc  >  2:737866/1‑149 (MQ=255)                                                                                                                                               ttAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGAGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGAGATTAAAGTGGGAATGCTTTTTCGCACTCTTGTCGTAGGTGcg  >  1:94796/1‑148 (MQ=255)                                                                                                                                               tggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttgctatcagctgtccctcctgttcagctactgacggggtggtgcgtaaccgcaaaagcaccgccggacatcagcgctttccc  >  2:694257‑M1/1‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     ACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCC  >  CP009273/2420254‑2420544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.