New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2420388 =	58 (0.830)	8 (0.110)	6/276	NT	12.1%	intergenic (‑121/+100)	hisJ/argT	histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit
	?	CP009273	= 3577555	NA (NA)					intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E

TTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAA  >  CP009273/3577410‑3577698                                                                                                                                                  |                                                                                                                                                ttGGGCGGCATCACCTGAATCTGGGCCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAc                                                                                                                                              <  2:50745/149‑1 (MQ=255) ttGAGCGGCATAACCCGAATCTGAGGCAGCACCAGGCACGGCTGGGACGGAAGGCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCCTTACCGAc                                                                                                                                              <  2:1007464/149‑1 (MQ=255)     gCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGGCATTACCGACATTa                                                                                                                                          >  1:217260/1‑149 (MQ=25)     gCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTAGCTGTCGATCCCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTAGGAGTCATTACCGACATTa                                                                                                                                          >  1:582993/1‑149 (MQ=255)        gtatgaCCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAACTCACTGTCACTCACCAAATCCGTGGGGCTGCATGACAGAGTCATCGGGCATTCTCTGAATATAAAACAATACCAACAAGTTGGAGTCATGACCGACATTaact                                                                                                                                       >  2:200147/6‑147 (MQ=11)        gCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaaa                                                                                                                                       >  1:1054501/1‑149 (MQ=35)                    tCTGAGGCAGCACCTGGCACCGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTg                                                                                                                           <  1:411152/149‑1 (MQ=255)                       gAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGCGCTGCATGGCAAAGTCATCGGGCATTATGTGAAGATCGAAGTTTTCGAAAAACTTGGAGTCATTACCGGCATTAAAAGTAACTTTTTTGaaa                                                                                                                        >  1:346643/1‑149 (MQ=14)                          gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATTGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTCGAGCCTGTTTCGACATTAAAAGTTCCTTTTTTGAAATTa                                                                                                                     <  1:914290/149‑1 (MQ=14)                          gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa                                                                                                                     <  1:104271/149‑1 (MQ=255)                                 cTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGataa                                                                                                              >  2:531436/1‑149 (MQ=255)                                  tGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGataat                                                                                                             >  2:70148/1‑149 (MQ=255)                                    gCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAatat                                                                                                           >  1:148970/1‑149 (MQ=255)                                           tGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAGTATTGGaaca                                                                                                    >  2:561700/1‑149 (MQ=255)                                            gggACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAg                                                                                                   >  2:860036/1‑149 (MQ=255)                                              gACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaa                                                                                                 >  2:706007/1‑149 (MQ=255)                                                cgggattCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCTATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaaa                                                                                               <  2:159442/143‑1 (MQ=255)                                                        gctggtctttccAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTCTGAAATTAGAGATAATATTGGCACAGAAAATATATTCa                                                                                       <  2:464997/138‑1 (MQ=255)                                                        gCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTcg                                                                                       >  1:630817/1‑148 (MQ=255)                                                        gCTGTCGCTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCa                                                                                       >  1:135171/1‑149 (MQ=255)                                                            tCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTc                                                                                   >  1:827059/1‑149 (MQ=255)                                                              gTTCTCAAATTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt                                                                                 <  1:209678/149‑1 (MQ=255)                                                              gTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt                                                                                 <  2:356719/149‑1 (MQ=255)                                                              gTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt                                                                                 <  2:347963/149‑1 (MQ=255)                                                              gTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt                                                                                 >  1:1160853/1‑149 (MQ=255)                                                              gTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt                                                                                 <  1:974571/149‑1 (MQ=255)                                                               ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGtt                                                                                <  1:938731/149‑1 (MQ=255)                                                                 ctcAAGATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTa                                                                              <  2:188499/149‑1 (MQ=255)                                                                 ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTa                                                                              >  2:271915/1‑149 (MQ=255)                                                                 ctataaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAAGACTATCAATAAGTTGGAGTCATTATCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTa                                                                              <  2:1034702/145‑1 (MQ=255)                                                                  tcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTGAg                                                                             >  2:281470/1‑149 (MQ=255)                                                                    aaaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTg                                                                           >  1:817013/1‑149 (MQ=255)                                                                       acccgcggAGCTGCAGGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTATCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGAtt                                                                        <  1:39591/143‑1 (MQ=255)                                                                           ggtgAGCGGCACGACAAAGTCATCGGGCATTATCTGAACATAACACACTATCAATAAGTTGGAGTAATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTtctc                                                                    <  2:610222/146‑1 (MQ=37)                                                                           gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTtctc                                                                    <  2:687544/149‑1 (MQ=255)                                                                           gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTtctc                                                                    <  2:918790/149‑1 (MQ=255)                                                                           gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTtctc                                                                    <  1:364711/149‑1 (MQ=255)                                                                           gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTtctc                                                                    <  1:794220/149‑1 (MQ=255)                                                                             ggAGCTGCATGACAAAGTCATCGGGCATTATCTGAACCTAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCtt                                                                  <  1:808661/149‑1 (MQ=255)                                                                             ggAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCtt                                                                  <  1:53101/149‑1 (MQ=255)                                                                              gAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTCCCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTc                                                                 >  1:783462/1‑149 (MQ=255)                                                                              gAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTTATTTTTGTTATAATATTGACACAGAAAATATATTAAGTTCGTTTAGTGATTTCTCTTc                                                                 >  2:1158203/1‑149 (MQ=21)                                                                               aGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATCATATTGGCACAGAAAATATATTCAGTTCGGTTAGTGATTTCTCTTcc                                                                >  2:857353/1‑148 (MQ=255)                                                                               aGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTCGCACAGAAAATAGATTCAGTTCGTTTAGTGATTTCTCTTCa                                                                >  1:956100/1‑149 (MQ=255)                                                                               aGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTCTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTAAATTACTTCTCTTCa                                                                >  2:305540/1‑149 (MQ=25)                                                                                       gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATCAATAGGTGACATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTaaa                                                        <  2:1185351/149‑1 (MQ=38)                                                                                        aCAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAAc                                                       <  1:855051/149‑1 (MQ=255)                                                                                        aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATCAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAAc                                                       >  1:1142053/1‑149 (MQ=255)                                                                                                   gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAATCGAAATCATGGa                                            >  1:520931/1‑149 (MQ=255)                                                                                                      cATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAg                                         <  2:226363/149‑1 (MQ=255)                                                                                                      cATTATCTGAACATAAAACACCATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAg                                         <  2:1155947/149‑1 (MQ=255)                                                                                                       aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTTATTTTTTTGTTAATATAAACAGAGGAAATTTATTCATTTCCTTTAGTGATTTCTCTTCATTCTTAACCTCAATCATggtactg                                        >  2:282280/1‑144 (MQ=16)                                                                                                       aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAgt                                        >  2:821033/1‑149 (MQ=255)                                                                                                       aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACAGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTAGTTTAGTGATTTCTCTTGATTCTTAAACGAAATTATGGACAgt                                        >  2:1131168/1‑149 (MQ=255)                                                                                                        ttATCTGAACATAAAACACTATCTATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATAATGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAAACATGGACAgtt                                       >  1:654627/1‑149 (MQ=255)                                                                                                        ttATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAAGTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAgtt                                       >  1:363206/1‑149 (MQ=255)                                                                                                              gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCat                                 >  2:559044/1‑149 (MQ=255)                                                                                                                   tAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGGGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCAtaataa                            <  2:513800/149‑1 (MQ=255)                                                                                                                       acacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCaa                        >  1:11323/1‑149 (MQ=255)                                                                                                                             tCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATCCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGaa                  >  2:908910/1‑149 (MQ=255)                                                                                                                               aaTAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATGATCACAAGGAAAc                >  1:1146590/1‑149 (MQ=255)                                                                                                                               aaTAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAAc                >  2:810543/1‑149 (MQ=255)                                                                                                                               aaTAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAAc                >  1:996790/1‑149 (MQ=255)                                                                                                                                       ggAGTCATAACCGACATTAAAAGGAACTTGTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCa        <  1:1121537/149‑1 (MQ=255)                                                                                                                                         aGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAtt      <  1:70148/149‑1 (MQ=255)                                                                                                                                         aGTAATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATCTTGGCAGGTAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCAtt      <  1:236251/149‑1 (MQ=255)                                                                                                                                           tCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGt    <  1:149365/149‑1 (MQ=255)                                                                                                                                             aTTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGCTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTaa  >  2:1063417/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                TTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTTAGTGATTTCTCTTCATTCTTAAACGAAATCATGGACAGTTGTTCATAATAATCAAAAGGAAACAAAAATCATTGTAA  >  CP009273/3577410‑3577698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.