| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,421,172 | A→C | 13.1% | D33E (GAT→GAG) | argT ← | lysine/arginine/ornithine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,421,172 | 0 | A | C | 13.1% | 176.0 / 16.8 | 80 | D33E (GAT→GAG) | argT | lysine/arginine/ornithine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (38/30); new base C (6/5); total (45/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 | |||||||||||
TTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTT > CP009273/2421025‑2421317 | tttCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTAt > 1:676225/1‑149 (MQ=255) ttCAGGGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATc < 1:55243/149‑1 (MQ=255) tCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGGACAGGTCGCCTGCATCCGTTTGCACATCTCGATACCGGGATCGATATCAAAGCCAACAAAATCACCGTTAGCATCTTTCGAGAAGGACGGGGCGTAGGGGGTATCg > 2:44242/1‑149 (MQ=255) aGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCGTCTTTCGATGAGAACGGTGCGTAGGTGGTGTCGGt > 1:98142/1‑149 (MQ=255) tggggggAGCAGCGCGTCAAAGTCACTGGCATCCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTc < 1:895802/146‑1 (MQ=255) tGAGGGGATCAGCGCGTCAAAGTCAGTGGCAACCCAGGTACATTTCAGCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTc > 1:693216/1‑149 (MQ=255) tGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTc < 1:1023180/149‑1 (MQ=255) tGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGCAGGTGGTATCGGtac > 2:1120233/1‑147 (MQ=255) tGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGGTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTc < 1:937341/149‑1 (MQ=255) tGAGGGGATCAGCGCGTCAAAGTCACTGGCAAACCAGGTACATTTCACCTGGTTCCGTTTGCACATCTCGTTACCGAGCTCGGTATCACAGCCAACAAAATAACCGTTGGGAACTTTCGATGCGAACGGAGCGCAGGGGGTATCGGGTc > 2:386650/1‑149 (MQ=255) tGAGGGGATCAGCGCGTCAAAGTCAATGGCAACCCAGGTACATTTCAGCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATGTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTc > 1:693499/1‑149 (MQ=255) tGAGGGGATCAGCGAATCAAACTCTCTGCCAATCTGATTACCTTTCACCTGCATGCTTTTTCACATCTCTTTACCTTTATCTATATCAAAGTCAACAAGATCGCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTc < 2:107296/149‑1 (MQ=255) ggAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTc < 2:1227480/148‑1 (MQ=255) aaGGGTATCACCGCGCCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTcc < 2:403153/148‑1 (MQ=255) aTCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACg > 1:901100/1‑149 (MQ=255) tCAGCTCGTCAAAGTCACTGGCCACCCAGGTACATTTCACCGGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGAACCGATAcca < 1:139450/149‑3 (MQ=255) tCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGAACCGATAcca < 1:1079334/149‑3 (MQ=255) aGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGGGCGTAGGTGGTATCGGTTCCGATACGTAc > 1:470894/1‑149 (MQ=255) gcgTCAAAGTCACTGGCAACCCAGGTACATTTCACCAGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTAAGCATCTTACGATGAGAACGGTGCGTAGGTGGTATCAGTTCCGCAACGTACCgc > 2:284046/1‑148 (MQ=255) gcgTCAAACTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCCACAAAATCACCTTTAGCATCTTTCGATGAGAACGGCGCGTAGGTGGTATCGGTTCCGGTACGTACCGt > 2:334973/1‑149 (MQ=255) cgTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTCCCGtc > 2:1042258/1‑149 (MQ=255) cgTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGtc > 1:1201171/1‑149 (MQ=255) tCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGtctc > 1:750625/1‑149 (MQ=255) tCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGATATCGGTTCCGATACGTACCGtctc > 1:756146/1‑149 (MQ=255) ccaattCACTGGCAACCCAGGTACATCTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTcc < 2:415703/144‑1 (MQ=255) aGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGt < 1:857762/149‑1 (MQ=255) tCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAg < 1:1176850/149‑1 (MQ=255) tGGCAACCCATGTACATTTCACTTGCCTCCGTGTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGcgcc < 2:707605/149‑1 (MQ=255) ggCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGcgccg < 1:742105/149‑1 (MQ=255) ggCAACCCAGCTACATTTCACCGGCACCCGTTTGCACATCACGGTATCGAGATCGATATCAAAGCCAACAAAATCACCTTGAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGcgccg < 1:139621/149‑1 (MQ=255) ccggTACATTTCACCTGCCTCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCt < 1:603704/147‑1 (MQ=255) cAGGTACATTTCCCCTGCCTCCGTTTGCACATCTCGTCACCGCGACCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGCTACTAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCt < 1:416890/149‑1 (MQ=255) cAGGTACATTTCACCTGCATCCGTTTGCCACTCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCt < 1:567137/149‑1 (MQ=255) cAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCt < 1:584541/149‑1 (MQ=255) cagttCCCCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGc < 2:946340/146‑1 (MQ=255) tttCACCTCCATCCGCTTACACATCTCGTTACCGAGATCGATACCAAAGCCAACAAAATCCCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCg < 1:180694/149‑1 (MQ=255) tCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATAAGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCAGCt > 2:301041/1‑149 (MQ=255) cACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCACTTTTCGCTGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCCCCGGAACCGCCGCATAGCTGGAAGCCGccg > 2:194956/1‑147 (MQ=255) aTCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGgagag > 1:671168/1‑149 (MQ=255) gcggttGCACATCTCGTTACCGAGAACGATATGCAAGCCAACAACATCACCTTTAGGACCGTTCGATGAGCACGCGTCGTAGGTGAAATCGGCTCCCATACGCTCCGTATCCCGTCGCGCTGCGTAGCTGGATGCCGCGGTGGAGAGAc < 2:112190/145‑1 (MQ=255) tttGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTGGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTAACGTCACCGCCACCCCCGCACCGCTGCAACCCGCCGTGGAGAGACCgc > 2:259015/1‑148 (MQ=255) tttGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGGGAGACCgc > 1:382829/1‑148 (MQ=255) gCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAACCACAGTTAGCATCTTTCGATGAGAACAGGTCGCAGGTGCTAGCGGTTCCGTTACGTTCCGTCTCCGGTAGCGCCCCAAAGCTTGAATCCGCGGTGGAGAGGccaccta > 1:609345/1‑144 (MQ=255) cactcctcGTTACCGAGATCGAGATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTaa < 2:21912/144‑1 (MQ=255) cacaTCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTaa < 1:943788/149‑1 (MQ=255) caTCTCTTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACa < 2:1130528/149‑1 (MQ=255) tctcGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACaaa < 2:693216/149‑1 (MQ=255) tctcGTCACCGAGACCGATATCAAAGCCAACACAATCACCTGTAGCATCTTTCGATCAGAACGGTGCGTAGGTGTTATCTGTTCCGATACGTACCGTCGCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACaaa < 1:161352/149‑1 (MQ=255) tccctttACCGAGATCGATATCAAAGCCAACAACATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACaaa < 2:693499/144‑1 (MQ=255) aCCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTCCCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACaggg > 1:724783/1‑147 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCg > 1:301999/1‑149 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCg > 1:970572/1‑149 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCg > 1:136716/1‑149 (MQ=255) cGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCAACTAACAAAGACAGAGCg > 1:1073365/1‑149 (MQ=255) aTCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTAAACAGCTGGCATTGTATCAGCTACAAACGTTTCCCGGTAGCGCCGAATCTTTTGAGGTCGCTGTGGGGTGGCCGACTAACAAAGACAGAGCGAGaa > 1:601168/1‑149 (MQ=255) tCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAAt < 1:940846/149‑1 (MQ=255) tCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGGATCGActt > 1:1126740/1‑149 (MQ=255) tCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGAGGAGAGACCGACTAACAAAGCCAAAGCGAGAATCGActt > 2:350246/1‑149 (MQ=255) tCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGCAACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCCGTGGAGAGACCGACTAACAAAGCCAGACCGAGAATCgccct > 1:749669/1‑145 (MQ=255) tCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGCCAGAGCGAGAATCGActt > 1:826688/1‑149 (MQ=255) tCAAAGCCAACAAAATCACCTTTAGCATCATTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGActt > 1:751134/1‑149 (MQ=255) gCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTca > 1:266132/1‑149 (MQ=255) aacaaAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcatac > 1:663680/1‑149 (MQ=255) caaAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcatacat > 2:1049566/1‑149 (MQ=255) aaaTCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATaa > 1:1200358/1‑149 (MQ=255) aaaTCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCGCCGGTAGCGCCGCATAGCTGGCAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGGGAATCGACTTCTTCATACATaa > 1:150109/1‑149 (MQ=255) tCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGGGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCAACCATAAccc > 2:373903/1‑149 (MQ=255) tCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGCCCGACTAACAAAGACAGAGCGACACTCGACTTCTTCATACATAAccc > 1:249862/1‑149 (MQ=255) tCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAAccc > 2:554264/1‑149 (MQ=255) gCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGaa < 1:719122/149‑1 (MQ=255) cATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGaaa > 1:1022205/1‑149 (MQ=255) cATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGaaa < 2:901100/149‑1 (MQ=255) cATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGATCCGATACGTACCGTCTCCGGGAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGTCCGACGCACAAAGACAGAGCGAGAATAGCCTTCTCAAAACGAAAACCTCAAGTGaaa > 2:679390/1‑149 (MQ=255) cTTCCGATGAGAACGGTGCGTAGGTGGTAGCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATg < 1:1006235/149‑1 (MQ=255) tttCGATGAGAACGGTGCGTAGGTGGTAACGGTTGCGATACGTACCGTCTCCGATAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGGGAAAATgg > 1:683462/1‑149 (MQ=255) gaggagaACGGTGCGTATGTGGGATGGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTTTGGAGAGACCGACTATCAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCttt < 2:394643/146‑1 (MQ=255) gaacgggtgggtggtggtATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCCGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTAt < 2:1211644/137‑1 (MQ=255) aCGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAAACCTCAAGTGAAAATGGCTTTTTTAtgt > 1:677655/1‑149 (MQ=255) tGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTtgtg > 1:292563/1‑149 (MQ=255) ggtATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAAGGGCTTTTTTATGTTGTGTAttgtgtt < 2:124036/149‑1 (MQ=255) | TTTCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAATCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTT > CP009273/2421025‑2421317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |