| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,912,734 | T→C | 6.4% | Q4R (CAA→CGA) | gudD ← | (D)‑glucarate dehydratase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,912,734 | 0 | T | C | 6.4% | 244.8 / 4.1 | 89 | Q4R (CAA→CGA) | gudD | (D)‑glucarate dehydratase 1 |
| Reads supporting (aligned to +/- strand): ref base T (39/44); new base C (3/3); total (42/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
CCTACGCCAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCATG > CP009273/2912587‑2912878 | ccTACGCCAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATGACCTGCATTTCAGTAACAACAGGCGTCGTAAATTg > 1:1124562/1‑149 (MQ=255) tACGCCAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACACCATGCGGCGTAACTTgag > 2:100986/1‑149 (MQ=255) tACGCCAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATCTCAGTAACAACACGCACCGTAACTCgag > 2:893633/1‑149 (MQ=255) aCGCCAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGTCCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTgaga < 1:683965/149‑1 (MQ=255) cGCCAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGaa > 1:783877/1‑149 (MQ=255) cGCCAGTGTGACCAGAATTATCTTGGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGaa < 1:490292/149‑1 (MQ=255) cAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTgaacaccc > 2:643289/1‑143 (MQ=255) tgtgACCAGAATTATCTTTGATAATCACAATATTACGCGTCAAGAACGGTGCGTGTGCACCACTCAGCTTCATCCGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCCGTAACAACAGGCGTCGTAAATTGCGAACGCata > 1:306692/1‑149 (MQ=255) aCCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTa > 1:1194811/1‑149 (MQ=255) ccAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTAt < 1:211097/149‑1 (MQ=255) aTTATCTTGGAAAATCCCAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCt < 2:160875/149‑1 (MQ=255) ttATCTTTGATAAACACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGGACTCATATTTATGTCCtt > 2:859628/1‑149 (MQ=255) cTTTGATAATCAAAATATTACGCGTAAAGAACTGTGCGTGTGCACCCCTCAGATTCATCAGCATACTGTCATGTTCCGTCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTc < 1:793935/149‑1 (MQ=255) tttGATAATCACAACATTACGCGTAAAGGACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCa < 1:933393/149‑1 (MQ=255) tGATATTCACAATTTTACGCGTAGGGAGGGGGGCGTGTGCACCACTTAGATTCATGAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGa < 2:1122198/149‑1 (MQ=255) gATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGaa > 1:1080571/1‑149 (MQ=255) aTAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAAt < 1:89551/149‑1 (MQ=255) tCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAAt < 1:1116464/149‑1 (MQ=255) cacaATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATg > 1:1162818/1‑149 (MQ=255) cacaATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTAATATTTATGTCCTTTTTCCTAATctttt > 2:808889/1‑145 (MQ=255) caATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATCGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGAc > 1:1116470/1‑149 (MQ=255) caATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATCGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGAc > 1:501807/1‑149 (MQ=255) atatTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACgg > 1:517502/1‑149 (MQ=255) atatTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGGAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACgg < 1:1032566/149‑1 (MQ=255) gcgTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCAGGACCCGCCAGAGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATCTTTATGTCCTTTTTCAGAATCAATGACGGCCGaaaa > 1:294885/1‑149 (MQ=255) gTAAACAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACg < 1:121191/149‑1 (MQ=255) aaaGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACggg < 2:1174237/149‑1 (MQ=255) aaGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCACCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTAAGAATAAATGAAGAACGAAAACGGGa > 2:426540/1‑149 (MQ=255) cGGGGCGTCTGCACCCCTCAGATTCATCAGCATACTGCCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGATCTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGttt < 2:1124562/149‑1 (MQ=255) ggTTCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCAGTTCCGTAACAACAGGCGTCGTAAATTGAGGACTAATATTTAGATCCGTTTTGAGAATCAATGACGGCCGAAACCGGGCCGtata > 2:1101616/1‑149 (MQ=255) ggTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGGAAACGGGACGGTTa > 1:507728/1‑149 (MQ=255) cGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCAGCCCCCGCGTGAGGCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGt < 1:35512/149‑1 (MQ=255) tgtgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGCCa > 1:978647/1‑149 (MQ=255) tgtgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTGAAGAAGCAACAAGCGTCGTAAATTGAGACCGCAAATTGAGGTCCTTTTTCAGAAACAATGCCGGCCGGCGACGGGTCGTTTGCGGtga > 1:234859/1‑147 (MQ=255) tgCACCGCTCAGATTCATCAGCATACTGTGATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCaaa < 2:56178/149‑1 (MQ=255) tgCACCCCTCAGGTTCATCAGCATCCTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCaaa < 2:671724/149‑1 (MQ=255) tgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCaaa < 1:827258/149‑1 (MQ=255) tgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCaaa < 1:291466/149‑1 (MQ=255) tgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATCGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCaaa < 2:501807/149‑1 (MQ=255) tgCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATCGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCaaa < 2:1116470/149‑1 (MQ=255) accccccAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGt < 2:72662/143‑1 (MQ=255) gATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCgg < 2:936023/149‑1 (MQ=255) gATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCAGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCgg < 2:693133/149‑1 (MQ=255) tcatcaGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGAGACGTTTACGGTCGAAGGTACACCCAGGGa > 2:1113331/1‑149 (MQ=255) tcatcaGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACACATATTTATGTCCTTTTTCAGAATCAAGGGCAGCCGAAAACGGGCCGTTCTCGGTCACAGGTCCAGCGGGGGa > 2:36554/1‑149 (MQ=255) catcaGCGTACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCATAATCAATGACGGCCGAAAACGGGACGGTTACGGTCAAAGGTCCGGCCggggct > 2:608987/1‑147 (MQ=255) catcaGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGAt < 1:399075/149‑1 (MQ=255) catcaGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAAACAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGCTCCAGCCGGGGAt < 1:849610/149‑1 (MQ=255) ttctgcattttGTCATGACCCGCTCACGGGATAACCTGCATTTCAGTAACAACGGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATc < 1:92594/139‑1 (MQ=255) atcaGCATACTGTCCTGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCCTCGCAGATTGTGAACTCATATTGATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATc < 2:443548/149‑1 (MQ=255) atcaGCATACTGTCATGACCGGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATc < 2:840705/149‑1 (MQ=255) atcaGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATc < 2:753632/149‑1 (MQ=255) atcaGCATACTGCCATGACCCGCCCCCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATCGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAACCGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATc < 2:841288/149‑1 (MQ=255) ataacgttACTGTCATTACCCGCCACCGGGATAACATCCATTTCAGTAACGACAGGCGGCGGAAATTGAGAACTCATATTTATGTTCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATc < 2:956300/142‑1 (MQ=255) tcaGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGGATCAATGACGGCCGAAGACGGGACCTTTACAGTCAAAGGTACCGGCGGGGacag > 2:424093/1‑146 (MQ=255) gCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGt > 1:541850/1‑149 (MQ=255) cATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTGCAGAAACGATGACGGCCGAAAACGGGACGGTTACGGTCAAATGTCCAGCCGGGGGTCCGGtc > 2:32853/1‑148 (MQ=255) cATACTGTCATGACCCGCCACCGAGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTACAGCCGGGGATCAGGTa > 1:301533/1‑149 (MQ=255) tACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATTTACTTTTTCAGAATCAATGACGGCCGAAAGCGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACt < 1:1160317/149‑1 (MQ=255) tACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGCAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGACTCGGGTAcc > 1:858749/1‑148 (MQ=255) aTGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCCTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCCCCCGGGGATCAGGTACTGCATCgg > 2:511418/1‑149 (MQ=255) cccGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTCTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCt > 1:1192276/1‑149 (MQ=255) ccGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTg > 2:741449/1‑149 (MQ=255) cGCCACCGTGATATCCTCTATTTCAGTAACAACAGTCGTCTTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATCACGGCCGAAACCTGGACTTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGc < 2:623745/149‑1 (MQ=255) gggATCACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTCCTGCATCGGACCTGCCTCGTTa > 2:830942/1‑149 (MQ=255) gggATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTa < 1:741449/149‑1 (MQ=255) ggATAACCTGCATTTCAGTAACAACAGGCGTCGTAATTTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGCTCAGGTACTGCATCGGAGCTGCGTCGTTAc > 1:728522/1‑149 (MQ=255) aTAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGAGCAGGTACTGCATGGGACCTGCGTCGTTAcgc > 1:10939/1‑149 (MQ=255) aTAACCTGCATTTCAGTAACAACAGGCGTCGCAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTAcgc < 1:831658/149‑1 (MQ=255) aTAACCTGCATTTCAGGAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTAcgc < 2:302527/149‑1 (MQ=255) cTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTAGTTACGCGCAcc > 1:1078991/1‑149 (MQ=255) gCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGc < 1:1049056/149‑1 (MQ=255) cATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGcc < 2:557675/149‑1 (MQ=255) aTTTCATTAACAACAGGCGTCGTAAATTAAGAACTCAGATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAATCGGGACGTTTACGGTTAAAGGTCCAGCCGGGGATCAGGTATTGCATCGGACCTGCGTCGTTACGCGCACCGCCa < 2:387999/149‑1 (MQ=255) cAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCa < 2:1104063/149‑1 (MQ=255) aGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAg < 2:1001090/149‑1 (MQ=255) tAACAGCAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGAc > 2:526078/1‑149 (MQ=255) tAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGAc > 2:472309/1‑149 (MQ=255) tAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGAc > 2:378405/1‑149 (MQ=255) acaGGCGTCGTAAATTTAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTta < 1:984266/149‑1 (MQ=255) acaGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTta < 1:1199492/149‑1 (MQ=255) ggCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAg < 2:836434/149‑1 (MQ=255) ggCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAg < 1:720731/149‑1 (MQ=255) gtcgtAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCACTGAAGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACGTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATACGcc > 2:226892/1‑149 (MQ=255) gtcgtAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGcc > 2:1041375/1‑149 (MQ=255) cgtAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTc < 2:783877/149‑1 (MQ=255) gtAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCa > 1:400894/1‑149 (MQ=255) tAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCAt < 1:175106/149‑1 (MQ=255) aaaTTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGCCGTTTATAGGCCTCCtg > 1:60546/1‑149 (MQ=255) | CCTACGCCAGTGTGACCAGAATTATCTTTGATAATCACAATATTACGCGTAAAGAACGGTGCGTGTGCACCACTCAGATTCATCAGCATACTGTCATGACCCGCCACCGGGATAACCTGCATTTCAGTAACAACAGGCGTCGTAAATTGAGAACTCATATTTATGTCCTTTTTCAGAATCAATGACGGCCGAAAACGGGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCATG > CP009273/2912587‑2912878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |