| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 721,831 | A→G | 4.8% | L221P (CTG→CCG) | kdpB ← | potassium translocating ATPase, subunit B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 721,831 | 0 | A | G | 4.8% | 235.3 / 2.2 | 84 | L221P (CTG→CCG) | kdpB | potassium translocating ATPase, subunit B |
| Reads supporting (aligned to +/- strand): ref base A (32/46); new base G (2/2); total (35/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.76e-01 | |||||||||||
CGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAAT > CP009273/721688‑721978 | cgccAATAGTGGTTGGGCTCAGACCGCACAGCGGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGCCGGTTGCCAGGAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCa > 2:1036110/1‑149 (MQ=255)cgccAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATCGTCAGGGCAATCAGCAGAATGGTCAGGGCa > 1:573226/1‑149 (MQ=255) gccAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCaa > 2:895338/1‑149 (MQ=255) gccAATAGTGGTTGGGAACAGACAGACCAGCTGCGCCACCAGTAGCGTTACGCTGACTACATTGCCGCCCCACGCCGAAAACGGCCACAGC‑GTGGCGGTTACCAGGAAAAAGACTATAGTTAGGACAATCGACAGAATGTGCAGGGcca > 2:534580/1‑147 (MQ=255) tAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCCGCCGAATGGTCCgggagacttcg > 2:1159539/1‑141 (MQ=255) tAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATgtcg > 1:70788/1‑149 (MQ=255) tAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCAAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGCCAAGttcg > 1:1129759/1‑149 (MQ=255) aGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATttcgt < 1:817942/149‑1 (MQ=255) ggggTTGGGCTCAGACAGACCAGCACGGCCACCAGTACCGTTACGCTGACGGCAGTACCGCCCCACGCGGAAAACGGCCACAGG‑GTGGCGGTTGCCAGTAAAAAGACGCTCGATAATCCTATCAGCAGAATGGTCAGGGCAATttcgtt < 2:268362/147‑1 (MQ=255) gTGGTTGGGATCAGACCGCCCAGCAGCGCCACCGGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATttcgtt < 2:503158/149‑1 (MQ=255) gTGGTTGGGACCAGACACACCACCAGCGCCACCAGCACCGGTACGCTGACTGCATTACCGCCCCCCGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATttcgtt < 2:996393/149‑1 (MQ=255) tGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGGAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATttcgttc < 1:775195/149‑1 (MQ=255) gctGGGAGCAGTCCGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGAATTCCCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCgg < 2:750029/147‑1 (MQ=255) ttGGGATCAGACAGCCCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTCCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGc < 1:823368/149‑1 (MQ=255) ttGCGATCAGACAGGCCAGCAGCGCAACCAGTCCCGCTACGTTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGc < 2:375827/149‑1 (MQ=255) gATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGttt > 1:1001100/1‑149 (MQ=255) gATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGttt > 1:1001252/1‑149 (MQ=255) aTCAGACCGGCCAGCAGGGCCACCGGTACCGTTACGCTGACTGCAGTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTGCGGCGtttt < 2:126241/149‑1 (MQ=255) aTCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCTAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGtttt > 1:837889/1‑149 (MQ=255) tCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTg < 1:1061983/149‑1 (MQ=255) ctgactggtcatcagcGCCACCAGTATCGTTACGCTGACTGCATTACCGCCCCAGGCGGAAAACGGCCACAGC‑GTGGGGGTTGCCGGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGc < 1:421909/137‑1 (MQ=255) cagacagaCCAGCAGCGCCACCAGTACCGTTACTCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGc < 1:495373/149‑1 (MQ=255) cagacCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGGCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCg < 1:241611/149‑1 (MQ=255) cagcGGCACCAGGACCGTTACGCTGACTGCATTACCGCACCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTgcgc < 1:988209/149‑1 (MQ=255) cgcCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAACGACGAAAGTCAGGGCAATCAGCAGAAGGATCAGGGCAATTTCGTGCGGCGTGTTCCGTCGCAGGGCGCCtt > 2:136452/1‑149 (MQ=255) caccaGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTcca < 2:1210484/149‑1 (MQ=255) aGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCGGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCAt > 2:395242/1‑149 (MQ=255) aGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCGGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCAt > 2:395227/1‑149 (MQ=255) aGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCAt > 1:1149436/1‑149 (MQ=255) aCCGGTACGCTGACGGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATCGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATcgc < 2:37222/149‑1 (MQ=255) cGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGa < 2:897021/149‑1 (MQ=255) ttgcGCTGACGGCGTTAGCGCGCTAGGGGGAAACCGGCCACAGG‑GTGGCGGTTGCGAGTAAAAAGACGATAGTCAGGGCAATCGGCAGAATGGTCAGGGCAATTTGGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGatc < 2:1080090/146‑1 (MQ=255) ttACGCTGGCTGCATCACCGCCCCACGCGGAAAACGGCCACAGC‑GGGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGatc < 2:736886/149‑1 (MQ=255) gCTGACTGCATTACCGCCCCACGCGGAAAACGGCC‑CACCTGTTTCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATcc < 1:341818/149‑1 (MQ=255) cTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAACGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGGTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCg > 1:368192/1‑149 (MQ=255) cTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCg < 2:785585/149‑1 (MQ=255) cTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGCCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTTCGTCGCTGTGCGCCTTCCACCATCGCGATCCTCCg > 1:1152793/1‑149 (MQ=255) tGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGa < 1:799388/149‑1 (MQ=255) tGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGa < 1:1174908/149‑1 (MQ=255) cATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGa < 1:775871/149‑1 (MQ=255) cATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGa > 1:183308/1‑149 (MQ=255) cATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGa > 2:171181/1‑149 (MQ=255) aTTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGaa > 2:401984/1‑149 (MQ=255) tACCGCTCCACGAGGAAAACGGCCAAAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCCTCCACCATCGCGATCATCCGATCCAGAAAt < 2:55464/149‑1 (MQ=255) ccGCCCCACGCGGAAAACGGCGACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGt < 1:860223/149‑1 (MQ=255) ccGCCCCACGCGGAAAACGGCCACAGG‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGt < 2:921154/149‑1 (MQ=255) cGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGGTAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAAGGtc > 1:657608/1‑149 (MQ=255) cGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGGGCCTTCCACCATCGCGATCATCCGATCCAGCAATGtc > 1:499763/1‑149 (MQ=255) aCGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGccc > 2:1145199/1‑148 (MQ=255) aCGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCg > 2:1090288/1‑149 (MQ=255) aaaaCGGCCACAGT‑GTGGCGGTTGCCAGTAAAAAGACGATCGTAAGGGCAATCAGCAGAATGGTCAGGGCCATTTCGTTCGGCGTTCTGCGTCGCAGTGCGCCTCCCACCATCTCGATCATCCGATCTAGAAACGTCTCGCCGGGGTTa < 2:182006/149‑1 (MQ=255) aaaaCGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCAACATCGCGTTCATCCGATCCAGAAATGTCTCGCCGGGGTTa < 2:1191378/149‑1 (MQ=255) aaaCGGCCGCAGC‑GTGGGGGTTGCCAGTGAAAAGTCGGTGGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTCCGGCGGTTGGCGTCGCTGTGCGCCTGCCACCAGCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTaa < 2:108923/149‑1 (MQ=255) aaCGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCGGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAAc < 1:395242/149‑1 (MQ=255) aaCGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCGGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAAc < 1:395227/149‑1 (MQ=255) ggCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCt < 2:401010/149‑1 (MQ=255) aGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTaccccc > 2:122014/1‑145 (MQ=255) gTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAAt < 2:592682/149‑1 (MQ=255) cGGTTGCCAGTAAATAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGAGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCCCGCCGGGGTTAACGCTACACTCAATCAcc < 1:755609/149‑1 (MQ=255) tAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCTGTCag > 2:1177171/1‑149 (MQ=255) tAAAAAGACGAGAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGCTACAAAAACATCACTCGTAGTTTTACGCTACACTCGATCACCAGCCAGTcgg > 2:566323/1‑147 (MQ=255) aaaaGACGATAGTCAGGGGAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGCTGATTCGATCCAGAACTGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCagaa < 1:787686/149‑1 (MQ=255) aaaGCCGAGGGTCAGGGCGATCAGCAGAATGGTCAGGGCAATGTCGTGCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCAGCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCagaaa < 2:731458/149‑1 (MQ=255) aaaGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTGACGCTACACTCCATCACCAGCCAGTCagaag > 1:1063841/1‑148 (MQ=255) aaaGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCagaaa < 1:865705/149‑1 (MQ=255) aaGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCagaaag > 1:256027/1‑149 (MQ=255) gACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCATGTTTCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGTCAGTCagaaagaa < 1:846569/149‑1 (MQ=255) aCGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAAt > 1:1194075/1‑149 (MQ=255) aTAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATAcg < 1:401984/149‑1 (MQ=255) aTAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATAcg > 1:260330/1‑149 (MQ=255) aTAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATAcg > 1:598466/1‑149 (MQ=255) aTAGTCAGGGCAAACAGCAGAATGGTCAGGGCAATTTCGTTAGGCGCTTTGCGCCCCTGAGGGCGTACCAGCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGCCAGAAAGAACAcg > 2:570615/1‑149 (MQ=255) cAGGGCAATCAGCAGAATGGGCCGGGCACTTTCGTTCGGCGTTTCGCGGCGCTGTGCGCCTTCCACCATCGCGACCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCCCCAGCCAGTCAGAAAGAATACGCGTgc < 2:249899/149‑1 (MQ=255) cAGGGCAATCAGCAGAATGGGCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTgc < 2:274845/149‑1 (MQ=255) aTCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGt > 1:1189021/1‑149 (MQ=255) gcgcaaTGTTCAGGGCAATTTCGTTCGGCGTTTTGAGCAGCTCTGCTCCTGCCACCATCGCGCTCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCTATCACCAGTCAGTCAGAAAGAATACGCGTGCCGCCGGTGACg < 2:871609/145‑1 (MQ=255) agagTGGTCAGGGCAATTTCGTTCGGCGTTTTGCGGCCCTGGGCGCCTCCCACCATCGCGACCATCCGATCCAGCAATGTCTCGCCGGGGTTAACGCTACACTCAACCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGa < 1:234092/149‑1 (MQ=255) agATTGGTCAGGGCAATCTCGTTCAGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCACGATCACCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACGCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGa < 1:1025675/149‑1 (MQ=255) agAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGa < 2:492041/149‑1 (MQ=255) gattGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACTCTCGATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAg < 2:5113/146‑1 (MQ=255) gAATGGTCAGGGCAATGTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAg < 1:317969/149‑1 (MQ=255) gTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCGGAAAGAATACGCGTGCCGCCGGTGACGGAGGCaca > 2:920306/1‑147 (MQ=255) tCAGGGCAATTTCGTTCGGCGTTTTGAGTCGCTGTGCGCCCTCCACCACCGCGGTCATCCGATCCAGAAAGGGCTCGCCGGGGGTAACGCTACACCCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGCCGGAGGCaaaa > 2:555028/1‑149 (MQ=255) cAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTGCCGCCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAAt < 1:538343/149‑1 (MQ=255) | CGCCAATAGTGGTTGGGATCAGACAGACCAGCAGCGCCACCAGTACCGTTACGCTGACTGCATTACCGCCCCACGCGGAAAACGGCCACAGC‑GTGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAAT > CP009273/721688‑721978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |