breseq  version 0.32.0b  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 444,779 C→T W440* (TGG→TAG)  cyoB ← cytochrome o ubiquinol oxidase subunit I
RA 2,305,853 C→T D126N (GAC→AAC)  ompC ← outer membrane porin protein C
RA 3,030,824 C→T E214E (GAG→GAA)  recJ ← ssDNA exonuclease, 5' ‑‑> 3'‑specific
RA 3,529,197 A→G S11P (TCA→CCA)  envZ ← sensory histidine kinase in two‑component regulatory system with OmpR
JC 3,676,871 +TAA intergenic (‑64/+119) dctA ← / ← yhjK C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase
RA 4,050,832 G→A S188L (TCG→TTG)  glnA ← glutamine synthetase
RA 4,390,286 C→A T61N (ACT→AAT)  hfq → global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 1116978 1118114 1137 41 [40] [39] 42 pyrC pyrC

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 360104 =NA (NA)109 (1.340) 74/296 0.0 NA intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 NA (NA)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 1045234 =87 (1.070)65 (0.800) 56/296 0.5 58.3% intergenic (‑34/‑55) gfcA/insA O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA
?CP009273 = 1973123 6 (0.070)intergenic (‑669/‑111) flhD/uspC flagellar class II regulon transcriptional activator, with FlhC/universal stress protein
* ? CP009273 = 104600180 (0.980)76 (0.930) 65/296 0.2 64.7% intergenic (+15/+418) insB1/cspH IS1 transposase B/stress protein, member of the CspA‑family
?CP009273 1973115 = 3 (0.040)intergenic (‑661/‑119) flhD/uspC flagellar class II regulon transcriptional activator, with FlhC/universal stress protein