New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1046001	80 (0.980)	76 (0.930)	65/296	0.2	64.7%	intergenic (+15/+418)	insB1/cspH	IS1 transposase B/stress protein, member of the CspA‑family
	?	CP009273	1973115 =	3 (0.040)					intergenic (‑661/‑119)	flhD/uspC	flagellar class II regulon transcriptional activator, with FlhC/universal stress protein

TGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045857‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGTC  >  CP009273/1973115‑1973257                                                                                                                                                                                                                                                                                                  TGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTAT                                                                                                                                             >  1:473430/1‑149   AGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAACCGGTGGAGCTGCATGACAAAGTACTCGGGCATTATCTGAACATAAAACACTATCAATGATTTGGAGTCATTACCTTATCT                                                                                                                                           >  2:591388/1‑149      tggATAACCGTAATCTGAGGCAGCACCTGGCACGGGTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTA                                                                                                                                        <  2:796240/146‑1      GGTATACCCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTA                                                                                                                                        <  2:495318/149‑1       GTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTAC                                                                                                                                       <  1:388741/149‑1              CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAAT                                                                                                                                >  1:729782/1‑149                GAATCTGAGGCAGCACCTGGCACGGCCGGGACGGCAGTGGCGGTGTTGCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCA                                                                                                                              <  1:902373/149‑1                   TCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTATACTAATAATCAGAC                                                                                                                           >  1:156185/1‑149                       gGGCAGCACCGGGCAGGGCTGGGACGGAAGGCGCTGTCGTGCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAAT                                                                                                                       <  2:1238540/148‑1                         GCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACCCTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATAT                                                                                                                     >  2:224910/1‑149                             CACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTAC                                                                                                                 <  2:370586/149‑1                                  GGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTTGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTT                                                                                                            <  1:470837/149‑1                                     ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCGATACCTTACCTTTACTAATAATCATACTAATATTTACCCGTTTGc                                                                                                         >  1:1209218/1‑148                                     ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGA                                                                                                         >  1:489672/1‑149                                      CGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGAC                                                                                                        <  1:1186990/149‑1                                       ggcctGGACGGAAGGCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACC                                                                                                       <  1:390539/144‑1                                       GGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTACCAGAACATAAAACACTATCAAAAAGTTGGAGTCATTACCTTAACTTTACTAATAAACAGACTAAAATTTACCTGTTTGACC                                                                                                       >  1:433047/1‑149                                         CTGGGACGGAAGCCGCTGTCGTCCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGA                                                                                                     <  2:1106186/149‑1                                              ACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGG                                                                                                <  1:214809/149‑1                                                     TCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCG                                                                                         >  1:88027/1‑149                                                       GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTC                                                                                       >  2:1188354/1‑149                                                        tgttctTTCTCAAAATCGGTGGACCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCG                                                                                      <  1:969203/143‑1                                                         TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGT                                                                                     <  2:366527/149‑1                                                         TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGCCATCGTGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGT                                                                                     <  1:1232213/149‑1                                                          GTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGGGGTGGGATTGCGTCGTT                                                                                    >  1:548363/1‑149                                                           TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTT                                                                                   <  2:729782/149‑1                                                           TCGCTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATAACACTAATATTTGCCTGTTTTACGGCGTTGGGATTGCGTCGTTT                                                                                   >  2:354564/1‑149                                                            CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTC                                                                                  <  2:511857/149‑1                                                             GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGCCGTTTCT                                                                                 >  2:355917/1‑149                                                              TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTAACTGAACATAAAACACTAGCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATCTTTACCTGTTTGAGCGAGTTGGGATTGCGTCGTTTCTC                                                                                >  1:237592/1‑149                                                                CTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCA                                                                              <  1:1067094/149‑1                                                                CTCAAAAGCTGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCA                                                                              <  1:430790/149‑1                                                                 TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCAT                                                                             <  1:810971/149‑1                                                                  CAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATT                                                                            >  1:606882/1‑149                                                                   AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACGCTAGCAATGAGTTGGAGTCAGTACCTTATCTTTCCTGATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGGGTCGTGTCTCCATTA                                                                           >  1:623693/1‑149                                                                   AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTA                                                                           <  1:603321/149‑1                                                                   AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCAATTc                                                                           <  2:1011074/149‑2                                                                   AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCACTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGGGTTGGGATTGCGTCGTTTCTCCATTA                                                                           >  2:198332/1‑149                                                                          GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGCCCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAA                                                                    >  1:1022648/1‑149                                                                                CTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTT                                                              <  1:1135411/149‑1                                                                                  GCATGACATAGTCATCGGGCATTATCTGAACTTAAATCACTATCTATAAGTTGGAGTCATTACCTTATCTTTACTAGTAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAA                                                            <  1:24370/149‑1                                                                                   CATGACAAAGTCTTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAAT                                                           <  2:959069/149‑1                                                                                   CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAAT                                                           >  1:552215/1‑149                                                                                     TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGT                                                         >  1:209897/1‑149                                                                                      GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGAGTGCGTCGTTTCTCAATTAGGAGTAAAGCTTTAATGTC                                                        >  2:510589/1‑149                                                                                        CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTTCATTAGGAGTAGAGCTTTAATGTTAC                                                      >  1:127030/1‑149                                                                                        CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCAC                                                      <  2:1086244/149‑1                                                                                         AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGCCATTACATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCATTAATGTCACa                                                     >  2:863166/1‑148                                                                                          AAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGATTTAATTGCACCT                                                    >  2:773160/1‑149                                                                                              CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCCTTAATGTCACCTGAAG                                                <  1:837079/149‑1                                                                                                  GGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAACCTTTAATGTCACCTGAAGTTCA                                            >  1:841911/1‑149                                                                                                   GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCAC                                           <  2:88027/149‑1                                                                                                   GGCATTATCTGAACATAAAACACTATCAAAAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGAGTAATATTTACCTGTTTGACGGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTgccc                                           >  1:527874/1‑145                                                                                                    GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACA                                          >  1:752302/1‑149                                                                                                    GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACA                                          <  2:67324/149‑1                                                                                                      ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGA                                        >  2:910491/1‑149                                                                                                        TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAAT                                      <  2:990476/149‑1                                                                                                            cGAACATAAAACACTATCATTAAGTTGGAGTCATTACTTTAGCTGTTCTAATGGTCAGACTAATATTTACCTGTTTGACCGAGGTGGGATCGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGG                                  <  2:138883/148‑1                                                                                                            TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGG                                  >  2:697659/1‑149                                                                                                            TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTCAAGTTCCCAGCATAAGG                                  >  2:1008842/1‑149                                                                                                            TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGCAGTAAAGCTTTAATGTACCCTGAAGTTCACAGAATAAGa                                  >  2:1062303/1‑148                                                                                                             GAACATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGA                                 >  2:326482/1‑149                                                                                                                 ATAAAACACTATCGATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTCATCCTTTAGGAGTAAAGCTTTGATGTCACCTGAAGTTCACAGAATAAGGAACAG                             >  1:906366/1‑149                                                                                                                 ATAAAACACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAG                             <  2:598418/149‑1                                                                                                                        ACTATCAATAATTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTGCACAGAATAAGGAACAGGTTATGA                      <  2:343369/149‑1                                                                                                                        ACTATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGA                      <  1:318866/149‑1                                                                                                                         ctagccATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTACGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAG                     <  2:551583/143‑1                                                                                                                           ATCAATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCT                   >  1:1198630/1‑149                                                                                                                              AATAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATg                >  1:390835/1‑148                                                                                                                                TAAGTTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGC              >  1:147226/1‑149                                                                                                                                 cgGTTGGAGTCATTACCCTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCA             <  1:881281/147‑1                                                                                                                                    TTGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCCCAGAATAAGGAACAGGTTATGAGCTATAGCAATA          >  2:513197/1‑149                                                                                                                                     TGGAGTCATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTAACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAAGGTCACCTGAAGTTCACGTGATAAGGAACAGGTTATGAGCTATAGGAATAT         >  2:1315118/1‑149                                                                                                                                       GAGTCATTACCTTAGCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTC       <  2:73558/149‑1                                                                                                                                         GTCATTACCTTATCTTTACTAATAATCAGCCTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTT     <  2:387076/149‑1                                                                                                                                            ATTACCTTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGTC  >  1:1105005/1‑149                                                                                                                                                                                                                                                                                                  TGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1045857‑1046001 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAGCAATATTCTTGTC  >  CP009273/1973115‑1973257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.