| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2722802 = | 48 (0.590) | 5 (0.110) +AGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAA |
3/164 | 8.5 | 12.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | CP009273 | = 4199681 | 83 (1.020) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAG > CP009273/2722655‑2722949 | aaTATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACGGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGac > 1:438297/1‑149 (MQ=255) tCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAAACGGGTGCCCTTGTGGTTTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTATCCTGGGCCTCTAGACGACGGGGACACGaaa > 2:546457/1‑149 (MQ=17) aCAAGACTTACCAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTg < 1:1236216/149‑1 (MQ=255) aCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCGCTAGACGAAGGGGACACGAAAATTg < 2:374496/149‑1 (MQ=255) cAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAGGGGGACACGAAAATTGc > 2:635182/1‑149 (MQ=255) cAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc < 1:925684/149‑1 (MQ=255) aCTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCCGCGTGAAAGGGCGCGGTCCTCGGCCCATAGCCGACGGGCACCCCAAGACTGCttct > 2:1159623/1‑147 (MQ=14) cTTAACTGTCTGTTATGAGATATTGAGGGCGGCGACTTTCACTCACAACCCAGCAACAGGCTCCGCCTAGGGGATTCGAACCCCTGTTACCGCCGTGACAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATc < 1:1097059/149‑1 (MQ=11) ttAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGGCACGAAAATTGCTTATcg > 1:681974/1‑148 (MQ=255) aaCAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTAACGCCGTGAAAGGGCGGTGTCCTGGGCCTATAGACGACGGGGCCACGAGAATTGCTTATCAcg > 2:36880/1‑149 (MQ=14) ccAGTCTGTTGTTAGATATTGAGGTCGGCGGCTTTCCCTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGATGTTAAAGAGCTGTCTCCTAGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgc < 2:615983/148‑1 (MQ=11) cTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc < 1:133823/149‑1 (MQ=33) ttttgGAGATATTGAGGTCGGCGACTTTTACTCACAAACCGGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGt < 2:1162434/148‑1 (MQ=12) tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGa < 1:1032330/149‑1 (MQ=32) tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGAGCGGCGTCCCCGTCCTCTAGACGAAGGGGAAACGACAATTGCTTATCAcgcgcgccgtgg > 1:252973/1‑141 (MQ=11) ttaagaTCTTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGGACTGGGCCTCTAGAAGAAGGGGAAACGAAACTAGCTAAGCACTCGTTGCGTGat > 2:1215422/4‑149 (MQ=11) ttGAGATATGGCGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGat < 1:429148/149‑1 (MQ=17) tGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGCGCAAGGGCGGTGTCCTGGGCCTCTAGACGACGGGGACACGAACATGGCTTATCACAAGTGCCGTGata > 2:22903/1‑149 (MQ=11) gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa < 1:85180/149‑2 (MQ=12) gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa < 2:354695/149‑2 (MQ=255) aggtatTGAGGTCGGCGACTTTCGCTCACAAACCGGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGCAGCAGAGGACACGAAAATAGCTTATCACGCGTTGCGTGCTAtt > 2:277995/4‑149 (MQ=11) tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAGGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTc < 1:635182/149‑1 (MQ=17) tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTc > 2:465232/1‑149 (MQ=32) ttGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTGTAGACGAAGGGGACACGGAAATTGCTTATCACGCGTTGCGTGATATTTTCgt > 2:476904/1‑149 (MQ=17) tttactcacAAACCAGCAGGTGGCGTCCCCTAGGGGATTCGAACCCCTGGTACCGACGTGAAAGGGCGGGGTCCTGGGCCCCGAGACGAAGGGGACCCGAAAACAGCTTCTCACGCGTTGCGTGATATTTTCGTCTAGGGAGAGCTTTc > 2:530199/4‑149 (MQ=1) tcccaAACCAGCCAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTaa < 2:1228836/146‑1 (MQ=1) ccccttgtcccgccgTGAAAGGGCGTTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGCGTGAGCTTTCATTAATAGAAAGCGACCGGCCTTATTCTCTTCAGCTTCACTcc < 2:902124/140‑1 (MQ=1) cggcgTGAAAGGGCGGTGGCCTGGGCCGCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTaa < 1:131750/146‑1 (MQ=0) ggCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTAGATCCCGAAGCGGAATGGCCTGGCTa > 2:207356/1‑149 (MQ=1) cTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACtttt > 1:1152570/1‑149 (MQ=32) tGGGCCTTTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc < 2:1299410/149‑1 (MQ=21) tGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtc > 1:1134512/1‑149 (MQ=33) gggCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca < 2:332669/149‑1 (MQ=35) gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 2:1220243/149‑1 (MQ=37) gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc < 1:1151796/149‑1 (MQ=37) gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc > 2:68581/1‑149 (MQ=35) gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatc > 2:708175/1‑149 (MQ=35) gCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGGGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCCCGTTtcatc > 2:671679/1‑149 (MQ=255) ccTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtcatca < 2:371331/149‑1 (MQ=38) ctAGACGAGGGGGACACGGAAATTGCGTATCATGCGTTGCGTGATACTTTCGTGTAGGGTGAGCTTTCAGTAATAGAAAGCGAACGGCCTTATTCTCCTCAGCCTCTCTCCCACCGCGTAACCGCCTTGCTATTCACTTTTCATCAGAc < 1:1215422/149‑1 (MQ=11) gACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAAt < 1:230295/149‑1 (MQ=38) gAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGGGTAGGGTGAGCTTTCATTAATAGAAAGCGAGCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtg < 2:274787/149‑1 (MQ=255) ggggACACGAAAATTGCTTATCCCGCGTTGCCTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCGCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCtgtgt < 1:891393/149‑1 (MQ=255) ggggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCGTGCTATTCACTTTTCATCAGCCAATCtgtgt > 1:675430/1‑149 (MQ=255) ggggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCCTGCTATTCACTTTTCATCAGACAATCtgtgt > 2:195488/1‑149 (MQ=38) gggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTTTTGTATTGTTAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTGTTCACTTTTCATCTGACAATCtgtgtg > 2:461338/1‑149 (MQ=11) ggACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGa < 1:708175/149‑1 (MQ=39) gACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAACCTGTGTGAg > 1:142513/1‑149 (MQ=37) | AATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAG > CP009273/2722655‑2722949 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |