mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,388,249 | 0 | T | C | 20.9% | 115.5 / 10.8 | 67 | T93A (ACT→GCT) | nuoL | NADH:ubiquinone oxidoreductase, membrane subunit L |
| Marginal new junction evidence (lowest skew 10 of 85 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 71 (0.870) | 17 (0.230) | 16/264 | 5.8 | 22.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 51 (0.700) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1203246 = | 70 (0.860) | 11 (0.150) | 10/264 | 8.2 | 16.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 53 (0.730) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 4158301 | 60 (0.740) | 5 (0.110) +66 bp |
3/164 | 8.5 | 11.3% | noncoding (2/76 nt) | gltT | tRNA‑Glu |
| ? | CP009273 | = 4199681 | 83 (1.020) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | CP009273 | 2722802 = | 48 (0.590) | 5 (0.110) +66 bp |
3/164 | 8.5 | 12.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | CP009273 | = 4199681 | 83 (1.020) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | CP009273 | = 854648 | 80 (0.980) | 8 (0.100) | 6/280 | 10.9 | 9.5% | intergenic (‑131/+21) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; preference for fructose‑1‑P, ribose‑5‑P and glucose‑6‑P |
| ? | CP009273 | = 854653 | 77 (1.000) | intergenic (‑136/+16) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; preference for fructose‑1‑P, ribose‑5‑P and glucose‑6‑P | |||||
| * | ? | CP009273 | = 3466925 | 98 (1.210) | 6 (0.080) | 6/284 | 11.0 | 6.0% | coding (516/540 nt) | rpsG | 30S ribosomal subunit protein S7 |
| ? | CP009273 | = 3466939 | 95 (1.220) | coding (502/540 nt) | rpsG | 30S ribosomal subunit protein S7 | |||||
| * | ? | CP009273 | = 4158269 | 73 (0.900) | 5 (0.070) | 5/276 | 11.4 | 7.5% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | CP009273 | = 4158291 | 55 (0.730) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | CP009273 | 2722802 = | 48 (0.590) | 5 (0.070) | 5/276 | 11.4 | 8.4% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | CP009273 | = 4158259 | 64 (0.840) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | CP009273 | = 2640641 | 93 (1.140) | 6 (0.080) | 5/276 | 11.4 | 6.8% | coding (44/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2640710 | 77 (1.020) | coding (4937/4962 nt) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein | |||||
| * | ? | CP009273 | 3330122 = | 85 (1.050) | 5 (0.060) | 5/282 | 11.6 | 5.9% | coding (41/255 nt) | ibaG | acid stress protein; putative transcriptional regulator, BolA family |
| ? | CP009273 | 3330144 = | 78 (1.010) | coding (19/255 nt) | ibaG | acid stress protein; putative transcriptional regulator, BolA family | |||||