| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3128417 = | 57 (1.200) | 2 (0.050) | 3/86 | NT | 4.8% | coding (455/1173 nt) | yghO | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 3128445 = | 31 (0.780) | coding (427/1173 nt) | yghO | predicted DNA‑binding transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCACAAGGTGCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGGAAAGCGGATTACTGATTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3128488‑3128417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgattgaTATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACGCTTCCGCTGCGCCA > W3110S.gb/3128445‑3128512 GTCACAAGGTGCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGG‑AAGCGGATTACTGATTGA < 1:3242305/71‑1 TCACAAGGTGCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGTAATCCGCTTTCCTGATTGA < 1:3459102/71‑1 TCACAAGGTGCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGGAAAGCGGATTACTGATTGA < 1:1896209/71‑1 CACAAGGTGCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGGAAAGCGGATTACTGATTG > 1:3963115/1‑69 ACAAGGTGCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGGAAAGCGGATTACTGATTG > 1:3822871/1‑68 GCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGTAATCCGCTTTCCTGATTGA < 1:4359743/62‑1 TCAGCCTGAATATCAATCAGGAAAGCGGATTACTGA > 1:1464225/1‑36 TCAGGAAAGCGGATTACTGATTGATATTCAGGCTGAAAGTAC > 1:4104100/1‑42 CAGGAAAGCGGATTACTGATTGATATTCAGGCTGAAAG > 1:2848131/1‑38 CTGATTGATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACACTTCCGCTG > 1:22052/1‑71 CTGATTGATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCA < 1:2853628/56‑1 CTGATTGATATTCAGGCTGAAAGGACCGCTGATCTTA > 1:4264873/1‑37 GATTGATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCAC > 1:2481106/1‑42 GATTGATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCAC > 1:1432773/1‑42 GATTGATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCA > 1:2601492/1‑41 TTGATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACGCTTCCGCTGCGC > 1:431747/1‑70 TTGATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACGCTTCCGCTGCG > 1:2826415/1‑69 TTGATATTCAGGCTGAAAGGACAGCTGATCTTACTTGCACCTTGTGACTTCAACCACGCTTCCGCTGCGC > 1:2420882/1‑70 GATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACGCTTCCGCTGCGCCA < 1:2024859/70‑1 GATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACGCTTCCGCTGCGCCA > 1:167570/1‑70 GATATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACGC > 1:1823015/1‑57 GTCACAAGGTGCAAGTAAGATCAGCGGTCCTTTCAGCCTGAATATCAATCAGGAAAGCGGATTACTGATTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3128488‑3128417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgattgaTATTCAGGCTGAAAGGACCGCTGATCTTACTTGCACCTTGTGACTTCAACCACGCTTCCGCTGCGCCA > W3110S.gb/3128445‑3128512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |