Sat Apr 17 02:20:21 2021

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 1 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/AA_PAL048_S48_R1_001.good.fq.gz /var/alemutpipe-outputs/good/AA_PAL048_S48_R2_001.good.fq.gz